Browse Element(s) Details

Os.32537.2.S1_s_at

Description

gb:AK103798.1
DB_XREF= gi:32989007
TID=Os.32537.2
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32537 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033146A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033146A06, full insert sequence.
FL= gb:AK103798.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os01g54040	11/11	ATP-dependent protease La domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os01g53990	Os.29826.1.S1_at	11/11	1	+	31382462..31385323	Pectinesterase family protein, expressed
LOC_Os01g53990	Os.29826.2.S1_x_at	9/11	1	+	31382462..31385323	Pectinesterase family protein, expressed
LOC_Os01g53990	Os.29826.2.S1_at	6/11	1	+	31382462..31385323	Pectinesterase family protein, expressed
LOC_Os01g54000	OsAffx.23784.1.S1_at	11/11	1	+	31389764..31390018	hypothetical protein
LOC_Os01g54010	Os.37851.2.S1_x_at	11/11	1	+	31392001..31396895	Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g54010	Os.37851.2.S1_s_at	11/11	1	+	31392001..31396895	Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g54010	Os.37851.1.S1_s_at	11/11	1	+	31392001..31396895	Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g54020	Os.14456.1.S1_at	11/11	1	+	31397039..31403124	Tryptophanyl-tRNA synthetase, putative, expressed
LOC_Os01g54030	Os.47303.1.S1_at	11/11	1	+	31403419..31408115	NADP-dependent malic enzyme, putative, expressed
LOC_Os01g54030	Os.47303.1.S1_s_at	11/11	1	+	31403419..31408115	NADP-dependent malic enzyme, putative, expressed
LOC_Os01g54040	Os.32537.2.S1_s_at	11/11	1	+	31405460..31414855	ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040	Os.32537.1.S1_s_at	11/11	1	+	31405460..31414855	ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040	OsAffx.21636.1.S1_x_at	11/11	1	+	31405460..31414855	ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040	Os.20712.1.A1_at	10/11	1	+	31405460..31414855	ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040	Os.32537.2.S1_at	9/11	1	+	31405460..31414855	ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040	Os.32537.1.S1_at	7/11	1	+	31405460..31414855	ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040	Os.20712.2.A1_at	7/11	1	+	31405460..31414855	ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54050	OsAffx.21635.2.S1_at	11/11	1	+	31418381..31422124	Histidine-containing phosphotransfer protein 4, putative
LOC_Os01g54060	OsAffx.2328.1.S1_at	11/11	1	+	31423436..31424043	hypothetical protein
LOC_Os01g54070	NA	NA	1	+	31424357..31424677	hypothetical protein
LOC_Os01g54080	Os.16488.2.S1_at	11/11	1	+	31426283..31433668	Kinesin motor domain containing protein, expressed
LOC_Os01g54080	Os.16488.1.S1_at	10/11	1	+	31426283..31433668	Kinesin motor domain containing protein, expressed
LOC_Os01g54090	Os.37326.1.S1_at	11/11	1	+	31435165..31436992	expressed protein
LOC_Os01g54100	Os.42148.1.S1_x_at	11/11	1	+	31438140..31442707	protein kinase family protein, putative, expressed
LOC_Os01g54100	Os.7493.1.S1_at	11/11	1	+	31438140..31442707	protein kinase family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006510	biological_process	ATP-dependent proteolysis
GO:0004176	molecular_function	ATP-dependent peptidase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.32537.2.S1_s_at--278--343	1	Chr01:31405900..31405924 (25 bp)	CAGAGTTCAGACATGTTGCAGCAGT	LOC_Os01g54040
Os.32537.2.S1_s_at--918--595	1	Chr01:31405862..31405886 (25 bp)	GAGCAATGCAGAATGCACCCTCCAT	LOC_Os01g54040
Os.32537.2.S1_s_at--475--65	1	Chr01:31405850..31405874 (25 bp)	ATGCACCCTCCATATCACTGAAAGG	LOC_Os01g54040
Os.32537.2.S1_s_at--824--285	1	Chr01:31405829..31405853 (25 bp)	AAGGGAAGGTCAGCTTACCTCTCCT	LOC_Os01g54040
Os.32537.2.S1_s_at--805--429	2	Chr06:16898012..16898119 (24 bp)	CCTCTCCTGCGCCAAAGAATAAGAA	NONE
Os.32537.2.S1_s_at--66--529	1	Chr01:31405790..31405814 (25 bp)	GAATGTGTGATCAGCTAAAGTCCCA	LOC_Os01g54040
Os.32537.2.S1_s_at--17--301	1	Chr01:31405745..31405769 (25 bp)	AATGAGGCCTGCAAGCACTACAGCA	LOC_Os01g54040
Os.32537.2.S1_s_at--1095--985	1	Chr01:31405727..31405751 (25 bp)	TACAGCAGCCGTTCCCTGTTTACAC	LOC_Os01g54040
Os.32537.2.S1_s_at--194--351	1	Chr01:31405694..31405718 (25 bp)	CATGGTTTACTCCTATTGTTGTGAA	LOC_Os01g54040
Os.32537.2.S1_s_at--528--65	1	Chr01:31405658..31405682 (25 bp)	ATGCACATTCACTAGTTCGCTTTCA	LOC_Os01g54040
Os.32537.2.S1_s_at--328--1063	1	Chr01:31405643..31405667 (25 bp)	TTCGCTTTCATTTAGGAACTGTAAC	LOC_Os01g54040

Target Sequence

CAGAGTTCAGACATGTTGCAGCAGTCTAAAGTAAATGTGAGCAATGCAGAATGCACCCTCCATATCACTGAAAGGGAAGG
TCAGCTTACCTCTCCTGCGCCAAAGAATAAGAATGTGTGATCAGCTAAAGTCCCACTGACAAATTTCTGAGCAGCAATGA
GGCCTGCAAGCACTACAGCAGCCGTTCCCTGTTTACACCNACNAGTTTCATGGTTTACTCCTATTGTTGTGAAACCCAGT
ATAAATGCACATTCACTAGTTCGCTTTCATTTAGGAACTGTAAC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis