Browse Element(s) Details

Os.47303.1.S1_at

Description

gb:AY444338.1
DB_XREF= gi:38261492
TID=Os.47303.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47303 (NCBI UniGene Cluster)
DEF=Oryza sativa (indica cultivar-group) cytosolic NADP malic enzyme mRNA, complete cds.
PROD=cytosolic NADP malic enzyme
FL= gb:AK073858.1 gb:AY444338.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os01g54030	11/11	NADP-dependent malic enzyme, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os01g53990	Os.29826.1.S1_at	11/11	1	+	31382462..31385323	Pectinesterase family protein, expressed
LOC_Os01g53990	Os.29826.2.S1_x_at	9/11	1	+	31382462..31385323	Pectinesterase family protein, expressed
LOC_Os01g53990	Os.29826.2.S1_at	6/11	1	+	31382462..31385323	Pectinesterase family protein, expressed
LOC_Os01g54000	OsAffx.23784.1.S1_at	11/11	1	+	31389764..31390018	hypothetical protein
LOC_Os01g54010	Os.37851.2.S1_x_at	11/11	1	+	31392001..31396895	Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g54010	Os.37851.2.S1_s_at	11/11	1	+	31392001..31396895	Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g54010	Os.37851.1.S1_s_at	11/11	1	+	31392001..31396895	Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g54020	Os.14456.1.S1_at	11/11	1	+	31397039..31403124	Tryptophanyl-tRNA synthetase, putative, expressed
LOC_Os01g54030	Os.47303.1.S1_at	11/11	1	+	31403419..31408115	NADP-dependent malic enzyme, putative, expressed
LOC_Os01g54030	Os.47303.1.S1_s_at	11/11	1	+	31403419..31408115	NADP-dependent malic enzyme, putative, expressed
LOC_Os01g54040	Os.32537.2.S1_s_at	11/11	1	+	31405460..31414855	ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040	Os.32537.1.S1_s_at	11/11	1	+	31405460..31414855	ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040	OsAffx.21636.1.S1_x_at	11/11	1	+	31405460..31414855	ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040	Os.20712.1.A1_at	10/11	1	+	31405460..31414855	ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040	Os.32537.2.S1_at	9/11	1	+	31405460..31414855	ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040	Os.32537.1.S1_at	7/11	1	+	31405460..31414855	ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040	Os.20712.2.A1_at	7/11	1	+	31405460..31414855	ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54050	OsAffx.21635.2.S1_at	11/11	1	+	31418381..31422124	Histidine-containing phosphotransfer protein 4, putative
LOC_Os01g54060	OsAffx.2328.1.S1_at	11/11	1	+	31423436..31424043	hypothetical protein
LOC_Os01g54070	NA	NA	1	+	31424357..31424677	hypothetical protein
LOC_Os01g54080	Os.16488.2.S1_at	11/11	1	+	31426283..31433668	Kinesin motor domain containing protein, expressed
LOC_Os01g54080	Os.16488.1.S1_at	10/11	1	+	31426283..31433668	Kinesin motor domain containing protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0006108	biological_process	malate metabolism
GO:0006633	biological_process	fatty acid biosynthesis
GO:0009051	biological_process	pentose-phosphate shunt, oxidative branch
GO:0009793	biological_process	embryonic development (sensu Magnoliophyta)
GO:0009845	biological_process	seed germination
GO:0005739	cellular_component	mitochondrion
GO:0009507	cellular_component	chloroplast
GO:0004470	molecular_function	malic enzyme activity
GO:0004473	molecular_function	malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity
GO:0016652	molecular_function	oxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.47303.1.S1_at--1055--41	1	Chr01:31406967..31406991 (25 bp)	ATCATCCTCGCACTATCCAATCCAA	LOC_Os01g54030
Os.47303.1.S1_at--395--59	1	Chr01:31406981..31407005 (25 bp)	ATCCAATCCAACATCACAATCTGAA	LOC_Os01g54030
Os.47303.1.S1_at--111--319	1	Chr01:31406984..31407008 (25 bp)	CAATCCAACATCACAATCTGAATGT	LOC_Os01g54030
Os.47303.1.S1_at--814--249	1	Chr01:31406990..31407014 (25 bp)	AACATCACAATCTGAATGTACTGCT	LOC_Os01g54030
Os.47303.1.S1_at--1086--329	1	Chr01:31406995..31407019 (25 bp)	CACAATCTGAATGTACTGCTGAACA	LOC_Os01g54030
Os.47303.1.S1_at--878--305	1	Chr01:31406998..31407022 (25 bp)	AATCTGAATGTACTGCTGAACAGGC	LOC_Os01g54030
Os.47303.1.S1_at--718--385	1	Chr01:31407001..31407025 (25 bp)	CTGAATGTACTGCTGAACAGGCATA	LOC_Os01g54030
Os.47303.1.S1_at--439--493	1	Chr01:31407021..31407180 (25 bp)	GCATATTCATGGAGTAAGGGCCGTG	LOC_Os01g54030
Os.47303.1.S1_at--65--23	1	Chr01:31407023..31407182 (25 bp)	ATATTCATGGAGTAAGGGCCGTGCA	LOC_Os01g54030
Os.47303.1.S1_at--315--13	1	Chr01:31407025..31407184 (25 bp)	ATTCATGGAGTAAGGGCCGTGCAAT	LOC_Os01g54030
Os.47303.1.S1_at--212--1053	1	Chr01:31407026..31407185 (25 bp)	TTCATGGAGTAAGGGCCGTGCAATA	LOC_Os01g54030

Target Sequence

ATCATCCTCGCACTATCCAATCCAACATCACAATCTGAATGTACTGCTGAACAGGCATATTCATGGAGTAAGGGCCGTGC
AATA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis