Browse Element(s) Details


Os.32537.2.S1_at

Description gb:AK103798.1
DB_XREF= gi:32989007
TID=Os.32537.2
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32537 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033146A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033146A06, full insert sequence.
FL= gb:AK103798.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g540409/11ATP-dependent protease La domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53990Os.29826.1.S1_at11/111+31382462..31385323Pectinesterase family protein, expressed
LOC_Os01g53990Os.29826.2.S1_x_at9/111+31382462..31385323Pectinesterase family protein, expressed
LOC_Os01g53990Os.29826.2.S1_at6/111+31382462..31385323Pectinesterase family protein, expressed
LOC_Os01g54000OsAffx.23784.1.S1_at11/111+31389764..31390018hypothetical protein
LOC_Os01g54010Os.37851.2.S1_x_at11/111+31392001..31396895Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g54010Os.37851.2.S1_s_at11/111+31392001..31396895Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g54010Os.37851.1.S1_s_at11/111+31392001..31396895Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g54020Os.14456.1.S1_at11/111+31397039..31403124Tryptophanyl-tRNA synthetase, putative, expressed
LOC_Os01g54030Os.47303.1.S1_at11/111+31403419..31408115NADP-dependent malic enzyme, putative, expressed
LOC_Os01g54030Os.47303.1.S1_s_at11/111+31403419..31408115NADP-dependent malic enzyme, putative, expressed
LOC_Os01g54040Os.32537.2.S1_s_at11/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.32537.1.S1_s_at11/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040OsAffx.21636.1.S1_x_at11/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.20712.1.A1_at10/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.32537.2.S1_at9/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.32537.1.S1_at7/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.20712.2.A1_at7/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54050OsAffx.21635.2.S1_at11/111+31418381..31422124Histidine-containing phosphotransfer protein 4, putative
LOC_Os01g54060OsAffx.2328.1.S1_at11/111+31423436..31424043hypothetical protein
LOC_Os01g54070NANA1+31424357..31424677hypothetical protein
LOC_Os01g54080Os.16488.2.S1_at11/111+31426283..31433668Kinesin motor domain containing protein, expressed
LOC_Os01g54080Os.16488.1.S1_at10/111+31426283..31433668Kinesin motor domain containing protein, expressed
LOC_Os01g54090Os.37326.1.S1_at11/111+31435165..31436992expressed protein
LOC_Os01g54100Os.42148.1.S1_x_at11/111+31438140..31442707protein kinase family protein, putative, expressed
LOC_Os01g54100Os.7493.1.S1_at11/111+31438140..31442707protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006510biological_processATP-dependent proteolysis
GO:0004176molecular_functionATP-dependent peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32537.2.S1_at--1005--2551NONE
AACTGAACCTTAACATTATGACAGG
NONE
Os.32537.2.S1_at--197--6411Chr01:31405590..31405614 (25 bp)
GATCTGAACCTACTACCTGAATATC
LOC_Os01g54040
Os.32537.2.S1_at--376--5431Chr01:31405585..31405609 (25 bp)
GAACCTACTACCTGAATATCATCAT
LOC_Os01g54040
Os.32537.2.S1_at--374--1772Chr01:31405576..31405600 (25 bp)
ACCTGAATATCATCATTGAAGACAA
LOC_Os01g54040
Os.32537.2.S1_at--1052--5591Chr01:31405556..31405580 (25 bp)
GACAAGATTGTTTGCACGGTACTTC
LOC_Os01g54040
Os.32537.2.S1_at--112--1251Chr01:31405552..31405576 (25 bp)
AGATTGTTTGCACGGTACTTCTCAA
LOC_Os01g54040
Os.32537.2.S1_at--483--8771Chr01:31405548..31405572 (25 bp)
TGTTTGCACGGTACTTCTCAAGAAG
LOC_Os01g54040
Os.32537.2.S1_at--886--2051Chr01:31405536..31405560 (25 bp)
ACTTCTCAAGAAGGGTAAATGCATT
LOC_Os01g54040
Os.32537.2.S1_at--911--4931Chr01:31405516..31405540 (25 bp)
GCATTGTAATTTGCGAAGTCTTCAA
LOC_Os01g54040
Os.32537.2.S1_at--532--10671Chr01:31405506..31405530 (25 bp)
TTGCGAAGTCTTCAAACTGTAAAAT
LOC_Os01g54040
Os.32537.2.S1_at--155--9831NONE
TAAAACAATTGAACAATTGCCCCTA
NONE
Target Sequence 
AACTGAACCTTAACATTATGACAGGAATGTAAAAGCAATACTCAATGTATATTCTTATAATACAATACGCGATGTATAGA
TGGATGTTCAGAGTTCAGACATGTTGCAGCAGTCTAAAGTAAATGTGAGCAATGCAGAATGCACCCTCCATATCACTGAA
AGGGAAGGTCAGCTTACCTCTCCTGCGCCAAAGAATAAGAATGTGTGATCAGCTAAAGTCCCACTGACAAATTTCTGAGC
AGCAATGAGGCCTGCAAGCACTACAGCAGCCGTTCCCTGTTTACACCNACNAGTTTCATGGTTTACTCCTATTGTTGTGA
AACCCAGTATAAATGCACATTCACTAGTTCGCTTTCATTTAGGAACTGTAACGAGACCAATANGAAGAGTNAAAAAGTGA
GATCTGAACCTACTACCTGAATATCATCATTGAAGACAAGATTGTTTGCACGGTACTTCTCAAGAAGGGTAAATGCATTG
TAATTTGCGAAGTCTTCAAACTGTAAAATAAAACAATTGAACAATTGCCCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32537.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis