Browse Element(s) Details


Os.16488.1.S1_at

Description gb:AK101026.1
DB_XREF= gi:32986235
TID=Os.16488.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16488 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative kinesin-like protein (P0439E07.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023150E15, full insert sequence.
FL= gb:AK101026.1 gb:AK058804.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5408010/11Kinesin motor domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54020Os.14456.1.S1_at11/111+31397039..31403124Tryptophanyl-tRNA synthetase, putative, expressed
LOC_Os01g54030Os.47303.1.S1_at11/111+31403419..31408115NADP-dependent malic enzyme, putative, expressed
LOC_Os01g54030Os.47303.1.S1_s_at11/111+31403419..31408115NADP-dependent malic enzyme, putative, expressed
LOC_Os01g54040Os.32537.2.S1_s_at11/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.32537.1.S1_s_at11/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040OsAffx.21636.1.S1_x_at11/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.20712.1.A1_at10/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.32537.2.S1_at9/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.32537.1.S1_at7/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.20712.2.A1_at7/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54050OsAffx.21635.2.S1_at11/111+31418381..31422124Histidine-containing phosphotransfer protein 4, putative
LOC_Os01g54060OsAffx.2328.1.S1_at11/111+31423436..31424043hypothetical protein
LOC_Os01g54070NANA1+31424357..31424677hypothetical protein
LOC_Os01g54080Os.16488.2.S1_at11/111+31426283..31433668Kinesin motor domain containing protein, expressed
LOC_Os01g54080Os.16488.1.S1_at10/111+31426283..31433668Kinesin motor domain containing protein, expressed
LOC_Os01g54090Os.37326.1.S1_at11/111+31435165..31436992expressed protein
LOC_Os01g54100Os.42148.1.S1_x_at11/111+31438140..31442707protein kinase family protein, putative, expressed
LOC_Os01g54100Os.7493.1.S1_at11/111+31438140..31442707protein kinase family protein, putative, expressed
LOC_Os01g54119Os.35400.1.S1_at11/111+31447556..31459579retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16488.1.S1_at--220--1711Chr01:31432323..31432463 (25 bp)
ACCAACAGCTATCAGGATCCGTTGA
LOC_Os01g54080
Os.16488.1.S1_at--491--3091Chr01:31433169..31433193 (25 bp)
AATAACCAGATTCTTTCTCACGAAG
LOC_Os01g54080
Os.16488.1.S1_at--1045--5451Chr01:31433193..31433217 (25 bp)
GAACGGGCAGCCATCAACTTCTAGA
LOC_Os01g54080
Os.16488.1.S1_at--400--6131Chr01:31433233..31433254 (22 bp)
GTTGTTCCGAAAACTCAAGGTAGCA
LOC_Os01g54080
Os.16488.1.S1_at--67--6971Chr01:31433393..31433417 (25 bp)
GTAGCATGAGACCTGGAACTGCGCA
LOC_Os01g54080
Os.16488.1.S1_at--567--2111Chr01:31433422..31433446 (25 bp)
ACAGGAGGATCCTTAGCCAAGCCTT
LOC_Os01g54080
Os.16488.1.S1_at--1118--10011Chr01:31433464..31433488 (25 bp)
TAGAATCTGACGAAGCATCCATGCA
LOC_Os01g54080
Os.16488.1.S1_at--758--6271Chr01:31433503..31433527 (25 bp)
GATGTAACTCAACTTTTGCGCTGAA
LOC_Os01g54080
Os.16488.1.S1_at--47--7331Chr01:31433551..31433575 (25 bp)
GTGCTACTGGTGTTTTCTGTGTATC
LOC_Os01g54080
Os.16488.1.S1_at--1044--9771Chr01:31433580..31433604 (25 bp)
TAAGTTTCGCTGGTCGACTCAACAA
LOC_Os01g54080
Os.16488.1.S1_at--555--3571NONE
CATTTGTACCATTTTTGTCCCGGCT
NONE
Target Sequence 
ACCAACAGCTATCAGGATCCGTTGAAGCTGAAGCTGAAGATAATGCATCTGACGATGGTTGCTCAGTGGGGGAAACTGAN
TATTCTCCTGCTGGTGCTTCAGAAACATCAGCAGAACGAGCGCATAAAGCGCCATCAAGAATAACCAGATTCTTTCTCAC
GAAGAACGGGCAGCCATCAACTTCTAGACCNNAAANCCAAGGGAGGTTGTTCCGAAAACTCAAGGTAGCATGAGACCTGG
AACTGCGCAGGCGACAGGAGGATCCTTAGCCAAGCCTTCCAAAAGACGGTAGAAATAGAATCTGACGAAGCATCCATGCA
AGTTTGGCAACTGTGATGTAACTCAACTTTTGCGCTGAAACACACNGGGGGGTAGTTTAGGAGGTGCTACTGGTGTTTTC
TGTGTATCTGTATAAGTTTCGCTGGTCGACTCAACAANGTATNTTGGTTAANGANTTCNATNGATNGANCAGNGAACATT
TGTACCATTTTTGTCCCGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16488.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis