Browse Element(s) Details


Os.42155.1.S1_at

Description gb:NM_191158.1
DB_XREF= gi:34909399
GEN=P0439E07.14
TID=Os.42155.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.42155 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0439E07.14 (P0439E07.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0439E07.14 (P0439E07.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5398011/11IQ calmodulin-binding motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53960OsAffx.22947.1.S1_x_at10/111+31349454..31355817retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g53960OsAffx.22947.3.S1_x_at4/111+31349454..31355817retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g53960OsAffx.22947.2.S1_x_at3/111+31349454..31355817retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g53960OsAffx.22947.5.S1_x_at2/111+31349454..31355817retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g53970OsAffx.2327.1.S1_at11/111+31358184..31358780hypothetical protein
LOC_Os01g53980Os.42155.1.S1_at11/111+31374358..31376236IQ calmodulin-binding motif family protein, expressed
LOC_Os01g53980Os.40388.2.S1_s_at1/111+31374358..31376236IQ calmodulin-binding motif family protein, expressed
LOC_Os01g53990Os.29826.1.S1_at11/111+31382462..31385323Pectinesterase family protein, expressed
LOC_Os01g53990Os.29826.2.S1_x_at9/111+31382462..31385323Pectinesterase family protein, expressed
LOC_Os01g53990Os.29826.2.S1_at6/111+31382462..31385323Pectinesterase family protein, expressed
LOC_Os01g54000OsAffx.23784.1.S1_at11/111+31389764..31390018hypothetical protein
LOC_Os01g54010Os.37851.2.S1_x_at11/111+31392001..31396895Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g54010Os.37851.2.S1_s_at11/111+31392001..31396895Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g54010Os.37851.1.S1_s_at11/111+31392001..31396895Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g54020Os.14456.1.S1_at11/111+31397039..31403124Tryptophanyl-tRNA synthetase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42155.1.S1_at--988--1651Chr01:31375655..31375679 (25 bp)
AGCGCGGACTCCAACTACGAGCGCA
LOC_Os01g53980
Os.42155.1.S1_at--2--1831Chr01:31375840..31375864 (25 bp)
ACGCCTGTCGATCCAGCGGAGCCAG
LOC_Os01g53980
Os.42155.1.S1_at--612--1631Chr01:31375854..31375878 (25 bp)
AGCGGAGCCAGCACCACGAGCGCGA
LOC_Os01g53980
Os.42155.1.S1_at--619--4391Chr01:31375946..31375970 (25 bp)
GCCAACAAGAGCGTCGACGGCATGG
LOC_Os01g53980
Os.42155.1.S1_at--3--2471Chr01:31375949..31375973 (25 bp)
AACAAGAGCGTCGACGGCATGGCGA
LOC_Os01g53980
Os.42155.1.S1_at--1099--1651Chr01:31376006..31376030 (25 bp)
AGCCCGCGCTACATGGCCGGCACGG
LOC_Os01g53980
Os.42155.1.S1_at--1033--491Chr01:31376110..31376134 (25 bp)
ATCGTGCTCGCGGACGACGCAGGAC
LOC_Os01g53980
Os.42155.1.S1_at--15--5651Chr01:31376132..31376156 (25 bp)
GACAGCGGCTTCTGCTTCGAGTGCT
LOC_Os01g53980
Os.42155.1.S1_at--669--4911Chr01:31376139..31376163 (25 bp)
GCTTCTGCTTCGAGTGCTCCGAGGA
LOC_Os01g53980
Os.42155.1.S1_at--1096--10591Chr01:31376141..31376165 (25 bp)
TTCTGCTTCGAGTGCTCCGAGGACT
LOC_Os01g53980
Os.42155.1.S1_at--478--4851Chr01:31376175..31376199 (25 bp)
GCTACTCCGAGGAGCTCAGCGACGA
LOC_Os01g53980
Target Sequence 
AGCGCGGACTCCAACTACGAGCGCAGCCNGCGGNTCGTCGAGATGGACACGTGCCACCGCCGCTCTCGGTCCTCCCGGAT
AGCCATCCGGCACTCCCGCGATCACTCGTCGGACTGCCTCACCCCGGCGCCCATGCCGCCGGCGCCGCTGTCGTGCTCGT
CGCCGATCTCCATCAAGCAGCCCCCACGCCTGTCGATCCAGCGGAGCCAGCACCACGAGCGCGACACCCGGCACGCCAAG
ACGGCGCACAACACCCCGCGCCTCGGCGCCCCGCCGTACGGCAGCTCGCCCGCCAACAAGAGCGTCGACGGCATGGCGAG
GGCGCGGCTCTCGCACCGGGACGCGCTCGGCAGCCCGCGCTACATGGCCGGCACGGCCTCGTCAGCGGCGAGGACGCGGT
GCCAGAGCGCGCCCAGGCAGCGACAGGCCGCCGAGGCGCCGGCGAGGTCGAGGAGATCGTGCTCGCGGACGACGCAGGAC
AGCGGCTTCTGCTTCGAGTGCTCCGAGGACTCCCGCCCCGGCTACTCCGAGGAGCTCAGCGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42155.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis