Browse Element(s) Details


OsAffx.2327.1.S1_at

Description tigr:9629.m05258
TID=OsAffx.2327.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5397011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53920Os.11775.1.S2_at11/111+31332874..31336695Leucine Rich Repeat family protein, expressed
LOC_Os01g53920Os.11775.2.S1_at11/111+31332874..31336695Leucine Rich Repeat family protein, expressed
LOC_Os01g53920Os.11775.2.S1_x_at11/111+31332874..31336695Leucine Rich Repeat family protein, expressed
LOC_Os01g53920Os.11775.1.S1_a_at11/111+31332874..31336695Leucine Rich Repeat family protein, expressed
LOC_Os01g53930Os.5547.1.S1_s_at11/111+31336016..31340802Hexokinase 1, putative, expressed
LOC_Os01g53930OsAffx.11594.1.S1_at8/111+31336016..31340802Hexokinase 1, putative, expressed
LOC_Os01g53940OsAffx.23783.1.S1_at10/111+31342756..31344464expressed protein
LOC_Os01g53950NANA1+31346241..31346545retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g53960OsAffx.22947.1.S1_x_at10/111+31349454..31355817retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g53960OsAffx.22947.3.S1_x_at4/111+31349454..31355817retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g53960OsAffx.22947.2.S1_x_at3/111+31349454..31355817retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g53960OsAffx.22947.5.S1_x_at2/111+31349454..31355817retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g53970OsAffx.2327.1.S1_at11/111+31358184..31358780hypothetical protein
LOC_Os01g53980Os.42155.1.S1_at11/111+31374358..31376236IQ calmodulin-binding motif family protein, expressed
LOC_Os01g53980Os.40388.2.S1_s_at1/111+31374358..31376236IQ calmodulin-binding motif family protein, expressed
LOC_Os01g53990Os.29826.1.S1_at11/111+31382462..31385323Pectinesterase family protein, expressed
LOC_Os01g53990Os.29826.2.S1_x_at9/111+31382462..31385323Pectinesterase family protein, expressed
LOC_Os01g53990Os.29826.2.S1_at6/111+31382462..31385323Pectinesterase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019915biological_processsequestering of lipid
GO:0019953biological_processsexual reproduction
GO:0005576cellular_componentextracellular region
GO:0016020cellular_componentmembrane
GO:0008289molecular_functionlipid binding
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2327.1.S1_at--639--10311Chr01:31358714..31358738 (25 bp)
TTTCTCACATATCTCTGCTTTTCTT
LOC_Os01g53970
OsAffx.2327.1.S1_at--159--2092Chr01:36473704..36473723 (20 bp)
ACATATCTCTGCTTTTCTTCGGTGA
NONE
OsAffx.2327.1.S1_at--547--452Chr01:36473704..36473727 (24 bp)
ATCTCTGCTTTTCTTCGGTGAGGGA
NONE
OsAffx.2327.1.S1_at--579--9571Chr01:31358693..31358717 (25 bp)
TCTTCGGTGAGGGAGGCTGGCAGCG
LOC_Os01g53970
OsAffx.2327.1.S1_at--8--911Chr01:31358484..31358508 (25 bp)
AGGCGGGCGCGCCAGCGGGCAGTGT
LOC_Os01g53970
OsAffx.2327.1.S1_at--918--1411Chr01:31358449..31358473 (25 bp)
AGAAAGGCAGCCAGGACGGAGGGTG
LOC_Os01g53970
OsAffx.2327.1.S1_at--116--1591Chr01:31358269..31358293 (25 bp)
AGCTCTTCACTGCAAGCGTCGTCAT
LOC_Os01g53970
OsAffx.2327.1.S1_at--852--10511Chr01:31358264..31358288 (25 bp)
TTCACTGCAAGCGTCGTCATCATGT
LOC_Os01g53970
OsAffx.2327.1.S1_at--837--9011Chr01:31358259..31358283 (25 bp)
TGCAAGCGTCGTCATCATGTTGGTT
LOC_Os01g53970
OsAffx.2327.1.S1_at--1104--2651Chr01:31358256..31358280 (25 bp)
AAGCGTCGTCATCATGTTGGTTGAC
LOC_Os01g53970
OsAffx.2327.1.S1_at--904--3811Chr01:31358231..31358255 (25 bp)
CTCCACGAGCGCAGCAGGTGGAGCA
LOC_Os01g53970
Target Sequence 
TTTCTCACATATCTCTGCTTTTCTTCGGTGAGGGAGGCTGGCAGCGGGCAGCGCGCGCGGCGGCCAAGGCGGAGCAGGCA
CGACGCCAAGCGGCGGCCGGGGCAGATGGTGGCGCGGAAATGGGGGGAGGAGGCGGGCGTGACGGCGGACGACGCGGATT
GGGGGAGAGAGGCGGGCGGGACGGCGGGAGCGACGGGCGGGGCGGAGGGTGGCGCGGAGAGGGGAAGAGGAGGCGGGCGC
GCCAGCGGGCAGTGTGGATTGGGGGAGAAAGGCAGCCAGGACGGAGGGTGGCGCGGAGAGGGGGAGGAGGCGGGCGCGGA
GGGCGGCGCAGAGAGGGGGAGAGAGGCGGTCGGGATGGCGGGAGCGGCAGGCAAGAGCGGCAGCGGAGTGGCGAGCGAAG
CTGGCGGTGGACGGCCGGTGAGAGCGGCGGCGCTCATCATGCTCCAGCTCTTCACTGCAAGCGTCGTCATCATGTTGGTT
GACCTCCACGAGCGCAGCAGGTGGAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2327.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis