Browse Element(s) Details


OsAffx.11594.1.S1_at

Description tigr:9629.m05254
TID=OsAffx.11594.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Hexokinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g539308/11Hexokinase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53890Os.6199.2.A1_at11/111+31311370..31312428RNA methyltransferase, TrmH family, group 3 containing protein, expressed
LOC_Os01g53890Os.6199.3.S1_at5/111+31311370..31312428RNA methyltransferase, TrmH family, group 3 containing protein, expressed
LOC_Os01g53900Os.23236.1.S1_at11/111+31319259..31324028Elongation factor 2, putative, expressed
LOC_Os01g53910Os.34512.1.S1_at11/111+31324833..31326046NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed
LOC_Os01g53920Os.11775.1.S2_at11/111+31332874..31336695Leucine Rich Repeat family protein, expressed
LOC_Os01g53920Os.11775.2.S1_at11/111+31332874..31336695Leucine Rich Repeat family protein, expressed
LOC_Os01g53920Os.11775.2.S1_x_at11/111+31332874..31336695Leucine Rich Repeat family protein, expressed
LOC_Os01g53920Os.11775.1.S1_a_at11/111+31332874..31336695Leucine Rich Repeat family protein, expressed
LOC_Os01g53930Os.5547.1.S1_s_at11/111+31336016..31340802Hexokinase 1, putative, expressed
LOC_Os01g53930OsAffx.11594.1.S1_at8/111+31336016..31340802Hexokinase 1, putative, expressed
LOC_Os01g53940OsAffx.23783.1.S1_at10/111+31342756..31344464expressed protein
LOC_Os01g53950NANA1+31346241..31346545retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g53960OsAffx.22947.1.S1_x_at10/111+31349454..31355817retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g53960OsAffx.22947.3.S1_x_at4/111+31349454..31355817retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g53960OsAffx.22947.2.S1_x_at3/111+31349454..31355817retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g53960OsAffx.22947.5.S1_x_at2/111+31349454..31355817retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g53970OsAffx.2327.1.S1_at11/111+31358184..31358780hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009747biological_processhexokinase-dependent signaling
GO:0010182biological_processsugar mediated signaling
GO:0005739cellular_componentmitochondrion
GO:0004396molecular_functionhexokinase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11594.1.S1_at--898--6431Chr01:31336386..31336410 (25 bp)
GATCATCTTTTCTAGTACTGTCTAA
LOC_Os01g53930
OsAffx.11594.1.S1_at--210--9611Chr01:31336347..31336371 (25 bp)
TCATGCAGTGCAGTGCTGGCTCATA
LOC_Os01g53930
OsAffx.11594.1.S1_at--564--8491Chr01:31336331..31336355 (25 bp)
TGGCTCATAGACTAACCATTCCCTG
LOC_Os01g53930
OsAffx.11594.1.S1_at--1117--3831Chr01:31336309..31336333 (25 bp)
CTGCTCACATCAGTGTTTCCTAGTA
LOC_Os01g53930
OsAffx.11594.1.S1_at--320--851Chr01:31336245..31336269 (25 bp)
ATGGAATCGAAATCGCTCCTCTCGT
LOC_Os01g53930
OsAffx.11594.1.S1_at--804--191Chr01:31336109..31336133 (25 bp)
ATTTCTGGTGCGTCTGCTCGGAGCA
LOC_Os01g53930
OsAffx.11594.1.S1_at--1123--9091Chr01:31336095..31336119 (25 bp)
TGCTCGGAGCATTTGACCAGGATCT
LOC_Os01g53930
OsAffx.11594.1.S1_at--895--471Chr01:31336074..31336098 (25 bp)
ATCTGCAGCACGTCCTTCATGGTTG
LOC_Os01g53930
OsAffx.11594.1.S1_at--204--6391Chr01:31335994..31336018 (25 bp)
GATCTCGTCGGAGTAACCCGCGTAC
NONE
OsAffx.11594.1.S1_at--91--6991Chr01:31335973..31335997 (25 bp)
GTACCTGATGCACTGATCCGTAGCG
NONE
OsAffx.11594.1.S1_at--558--631Chr01:31335942..31335966 (25 bp)
ATGCTCTCTCCCGATTGATAGTGGT
NONE
Target Sequence 
GATCATCTTTTCTAGTACTGTCTAATATGGCGTTTATATTCATGCAGTGCAGTGCTGGCTCATAGACTAACCATTCCCTG
CTCACATCAGTGTTTCCTAGTAGGTAAAGGTGCGGCAGTGCTCTGCTCCTTTCTTCAGACAATGGAATCGAAATCGCTCC
TCTCGTCAGCGTCGTCGTCTGCTCCTTTGGCCTTCGCGGGCTGTTTCCGGCGGCTGCCTCGTTGCGGCAGCAACAGCGGC
GCCACTTCGTACTCCTCCTGCCCGCTCTCCGCCTTGCATTTCTGGTGCGTCTGCTCGGAGCATTTGACCAGGATCTGCAG
CACGTCCTTCATGGTTGGCCGTGACGCGGGCGTGGCCCCCGTGCACATCACGCCTAGCCTGAACACCACCTCGATCTCGT
CGGAGTAACCCGCGTACCTGATGCACTGATCCGTAGCGTCGGGGATGCTCTCTCCCGATTGATAGTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11594.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis