Browse Element(s) Details


Os.5547.1.S1_s_at

Description gb:AK065656.1
DB_XREF= gi:32975674
TID=Os.5547.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5547 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative hexokinase I (P0439E07.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013039E17, full insert sequence.
FL= gb:AK065656.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5393011/11Hexokinase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53890Os.6199.2.A1_at11/111+31311370..31312428RNA methyltransferase, TrmH family, group 3 containing protein, expressed
LOC_Os01g53890Os.6199.3.S1_at5/111+31311370..31312428RNA methyltransferase, TrmH family, group 3 containing protein, expressed
LOC_Os01g53900Os.23236.1.S1_at11/111+31319259..31324028Elongation factor 2, putative, expressed
LOC_Os01g53910Os.34512.1.S1_at11/111+31324833..31326046NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed
LOC_Os01g53920Os.11775.1.S2_at11/111+31332874..31336695Leucine Rich Repeat family protein, expressed
LOC_Os01g53920Os.11775.2.S1_at11/111+31332874..31336695Leucine Rich Repeat family protein, expressed
LOC_Os01g53920Os.11775.2.S1_x_at11/111+31332874..31336695Leucine Rich Repeat family protein, expressed
LOC_Os01g53920Os.11775.1.S1_a_at11/111+31332874..31336695Leucine Rich Repeat family protein, expressed
LOC_Os01g53930Os.5547.1.S1_s_at11/111+31336016..31340802Hexokinase 1, putative, expressed
LOC_Os01g53930OsAffx.11594.1.S1_at8/111+31336016..31340802Hexokinase 1, putative, expressed
LOC_Os01g53940OsAffx.23783.1.S1_at10/111+31342756..31344464expressed protein
LOC_Os01g53950NANA1+31346241..31346545retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g53960OsAffx.22947.1.S1_x_at10/111+31349454..31355817retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g53960OsAffx.22947.3.S1_x_at4/111+31349454..31355817retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g53960OsAffx.22947.2.S1_x_at3/111+31349454..31355817retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g53960OsAffx.22947.5.S1_x_at2/111+31349454..31355817retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g53970OsAffx.2327.1.S1_at11/111+31358184..31358780hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009747biological_processhexokinase-dependent signaling
GO:0010182biological_processsugar mediated signaling
GO:0005739cellular_componentmitochondrion
GO:0004396molecular_functionhexokinase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5547.1.S1_s_at--342--10031Chr01:31337032..31337056 (25 bp)
TAGAAGCAACGCTTGCAGACCTGCT
LOC_Os01g53930
Os.5547.1.S1_s_at--583--6211Chr01:31337000..31337024 (25 bp)
GAGGCTGCCTCATCAGTTGTTGTCA
LOC_Os01g53930
Os.5547.1.S1_s_at--772--2811Chr01:31336976..31337000 (25 bp)
AAGTTGGCAAACGATGGCTCTGGCA
LOC_Os01g53930
Os.5547.1.S1_s_at--876--9311Chr01:31336922..31336946 (25 bp)
TCCCAGTATGCTAGCGTCGAGTAGT
LOC_Os01g53930
Os.5547.1.S1_s_at--134--811Chr01:31336886..31336910 (25 bp)
ATGGGACTGAGCTCCCAGTGTAGCT
LOC_Os01g53930
Os.5547.1.S1_s_at--399--1111Chr01:31336870..31336894 (25 bp)
AGTGTAGCTTGTTTTCCTCCCATTT
LOC_Os01g53930
Os.5547.1.S1_s_at--334--471Chr01:31336799..31336823 (25 bp)
ATCTCCTTTTGCTATTCTGCAGTCA
LOC_Os01g53930
Os.5547.1.S1_s_at--659--9831Chr01:31336772..31336796 (25 bp)
TAAACGAGTGCCTGTGCAGCGGGAT
LOC_Os01g53930
Os.5547.1.S1_s_at--939--6251Chr01:31336750..31336774 (25 bp)
GATGTAGCTAGTATGGCGCCAAAGA
LOC_Os01g53930
Os.5547.1.S1_s_at--1058--2991Chr01:31336665..31336689 (25 bp)
AATGATGCCGTTCTTTTCCTGCAAA
LOC_Os01g53930
Os.5547.1.S1_s_at--201--9351Chr01:31336575..31336599 (25 bp)
TCGCGTGTAGCCTTTTGTCATTCAG
LOC_Os01g53930
Target Sequence 
TAGAAGCAACGCTTGCAGACCTGCTTGGAGAGGAGGCTGCCTCATCAGTTGTTGTCAAGTTGGCAAACGATGGCTCTGGC
ATCGGAGCTGCACTTCTTGCAGCATCTCACTCCCAGTATGCTAGCGTCGAGTAGTAACAGGAGCTCATGGGACTGAGCTC
CCAGTGTAGCTTGTTTTCCTCCCATTTTCCCCGTTTCTTTCCAATGGGAGTTCGTTTCCCTCCTGCGATTCGCATCTCCT
TTTGCTATTCTGCAGTCACATAAACGAGTGCCTGTGCAGCGGGATGTAGCTAGTATGGCGCCAAAGAGTTTGCAGTTATC
ACATGAACAAGCATTTGCAACTGCAGGGAAGTGAAAACGGGGGCTTGAATGATGCCGTTCTTTTCCTGCAAATTATTTTC
CCCCNTTCCCTGTAAGTTTGTATTGTGATGCGATGTCGCAAACCAATCACAGCGGTTTCGCGTGTAGCCTTTTGTCATTC
AG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5547.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis