Browse Element(s) Details


Os.6199.2.A1_at

Description gb:BI306081
DB_XREF= gi:14981403
DB_XREF=NL_3_D23
CLONE=NL_3_D23
TID=Os.6199.2
CNT=8
FEA=FLmRNA
TIER=Stack
STK=6
UG=Os.6199 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0439E07.6 (P0439E07.6), mRNA
FL= gb:AK062779.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5389011/11RNA methyltransferase, TrmH family, group 3 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53860OsAffx.11593.2.S1_s_at11/111+31288752..31292062expressed protein
LOC_Os01g53870OsAffx.24046.1.S1_at11/111+31294495..31296828hAT family dimerisation domain containing protein
LOC_Os01g53870OsAffx.24046.2.S1_x_at4/111+31294495..31296828hAT family dimerisation domain containing protein
LOC_Os01g53870OsAffx.24046.7.S1_x_at3/111+31294495..31296828hAT family dimerisation domain containing protein
LOC_Os01g53870OsAffx.24046.3.S1_x_at2/111+31294495..31296828hAT family dimerisation domain containing protein
LOC_Os01g53870Os.53053.1.S1_at2/111+31294495..31296828hAT family dimerisation domain containing protein
LOC_Os01g53880Os.11608.1.S1_at11/111+31302613..31306303AUX/IAA family protein, expressed
LOC_Os01g53890Os.6199.2.A1_at11/111+31311370..31312428RNA methyltransferase, TrmH family, group 3 containing protein, expressed
LOC_Os01g53890Os.6199.3.S1_at5/111+31311370..31312428RNA methyltransferase, TrmH family, group 3 containing protein, expressed
LOC_Os01g53900Os.23236.1.S1_at11/111+31319259..31324028Elongation factor 2, putative, expressed
LOC_Os01g53910Os.34512.1.S1_at11/111+31324833..31326046NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed
LOC_Os01g53920Os.11775.1.S2_at11/111+31332874..31336695Leucine Rich Repeat family protein, expressed
LOC_Os01g53920Os.11775.2.S1_at11/111+31332874..31336695Leucine Rich Repeat family protein, expressed
LOC_Os01g53920Os.11775.2.S1_x_at11/111+31332874..31336695Leucine Rich Repeat family protein, expressed
LOC_Os01g53920Os.11775.1.S1_a_at11/111+31332874..31336695Leucine Rich Repeat family protein, expressed
LOC_Os01g53930Os.5547.1.S1_s_at11/111+31336016..31340802Hexokinase 1, putative, expressed
LOC_Os01g53930OsAffx.11594.1.S1_at8/111+31336016..31340802Hexokinase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006396biological_processRNA processing
GO:0003723molecular_functionRNA binding
GO:0008173molecular_functionRNA methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6199.2.A1_at--330--3631Chr01:31311573..31311597 (25 bp)
CTTGAATGTAAGTGTCGCAGCAGGG
LOC_Os01g53890
Os.6199.2.A1_at--43--7891Chr01:31311549..31311573 (25 bp)
GGTTTTGCTTTATCATCTGGCTGGA
LOC_Os01g53890
Os.6199.2.A1_at--590--4891Chr01:31311543..31311567 (25 bp)
GCTTTATCATCTGGCTGGAACAAAT
LOC_Os01g53890
Os.6199.2.A1_at--1109--8151Chr01:31311527..31311551 (25 bp)
GGAACAAATGCATCCCCTGTAAGTG
LOC_Os01g53890
Os.6199.2.A1_at--280--4971Chr01:31311518..31311542 (25 bp)
GCATCCCCTGTAAGTGATAAGCCTA
LOC_Os01g53890
Os.6199.2.A1_at--1158--9771Chr01:31311508..31311532 (25 bp)
TAAGTGATAAGCCTAGCATCCCTCT
LOC_Os01g53890
Os.6199.2.A1_at--231--4311Chr01:31311497..31311521 (25 bp)
CCTAGCATCCCTCTTATGTAAGGAT
LOC_Os01g53890
Os.6199.2.A1_at--770--111Chr01:31311464..31311488 (25 bp)
ATTCATCCATCCATATCATAATTAT
LOC_Os01g53890
Os.6199.2.A1_at--352--10371Chr01:31311425..31311449 (25 bp)
TTTTAACACTTACTCCCTCTATGTA
LOC_Os01g53890
Os.6199.2.A1_at--931--10471Chr01:31311416..31311440 (25 bp)
TTACTCCCTCTATGTACTGAGTTCA
LOC_Os01g53890
Os.6199.2.A1_at--152--3871Chr01:31311400..31311424 (25 bp)
CTGAGTTCAGTTTCAGTCGCATGCT
LOC_Os01g53890
Target Sequence 
CTTGAATGTAAGTGTCGCAGCAGGGGTTTTGCTTTATCATCTGGCTGGAACAAATGCATCCCCTGTAAGTGATAAGCCTA
GCATCCCTCTTATGTAAGGATGTCACATAATTCATCCATCCATATCATAATTATTTATATTAGTTCTCTTTTAACACTTA
CTCCCTCTATGTACTGAGTTCAGTTTCAGTCGCATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6199.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis