Browse Element(s) Details


OsAffx.24046.1.S1_at

Description gb:NM_191149.1
DB_XREF= gi:34909381
GEN=P0439E07.4
TID=OsAffx.24046.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0439E07.4 (P0439E07.4), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5387011/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53830NANA1+31273196..31274451transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g53840Os.2000.2.S1_x_at10/111+31276227..31281586protein kinase family protein, putative, expressed
LOC_Os01g53850OsAffx.11592.2.S1_at11/111+31282309..31283241hypothetical protein
LOC_Os01g53860OsAffx.11593.2.S1_s_at11/111+31288752..31292062expressed protein
LOC_Os01g53870OsAffx.24046.1.S1_at11/111+31294495..31296828hAT family dimerisation domain containing protein
LOC_Os01g53870OsAffx.24046.2.S1_x_at4/111+31294495..31296828hAT family dimerisation domain containing protein
LOC_Os01g53870OsAffx.24046.7.S1_x_at3/111+31294495..31296828hAT family dimerisation domain containing protein
LOC_Os01g53870OsAffx.24046.3.S1_x_at2/111+31294495..31296828hAT family dimerisation domain containing protein
LOC_Os01g53870Os.53053.1.S1_at2/111+31294495..31296828hAT family dimerisation domain containing protein
LOC_Os01g53880Os.11608.1.S1_at11/111+31302613..31306303AUX/IAA family protein, expressed
LOC_Os01g53890Os.6199.2.A1_at11/111+31311370..31312428RNA methyltransferase, TrmH family, group 3 containing protein, expressed
LOC_Os01g53890Os.6199.3.S1_at5/111+31311370..31312428RNA methyltransferase, TrmH family, group 3 containing protein, expressed
LOC_Os01g53900Os.23236.1.S1_at11/111+31319259..31324028Elongation factor 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24046.1.S1_at--394--1771Chr01:31296243..31296267 (25 bp)
ACCTGGTGTAGGTGATGGATTTGCT
LOC_Os01g53870
OsAffx.24046.1.S1_at--559--7271Chr01:31296275..31296299 (25 bp)
GTCCAGGTGCTGGACTTAGTGCTAG
LOC_Os01g53870
OsAffx.24046.1.S1_at--803--7311Chr01:31296293..31296317 (25 bp)
GTGCTAGTGCTAGTCCAATTCCTGG
LOC_Os01g53870
OsAffx.24046.1.S1_at--789--1131Chr01:31296304..31296328 (25 bp)
AGTCCAATTCCTGGATTTGGTGCTA
LOC_Os01g53870
OsAffx.24046.1.S1_at--483--5611Chr01:31296457..31296481 (25 bp)
GACACAGTCAACCAATTCGATGACG
LOC_Os01g53870
OsAffx.24046.1.S1_at--629--6491Chr01:31296544..31296568 (25 bp)
GATAGAGATGTTTTGAATGTTCCTG
LOC_Os01g53870
OsAffx.24046.1.S1_at--240--10111Chr01:31296578..31296602 (25 bp)
TATCGTTGGAATATGCTTTTAGCTT
LOC_Os01g53870
OsAffx.24046.1.S1_at--180--3551Chr01:31296615..31296639 (25 bp)
CATCGAGGATCGACGGCGGTGTCTA
LOC_Os01g53870
OsAffx.24046.1.S1_at--164--7451Chr01:31296633..31296657 (25 bp)
GTGTCTAGGTCCTGCCATGGTGCAA
LOC_Os01g53870
OsAffx.24046.1.S1_at--495--2331Chr01:31296696..31296720 (25 bp)
AAAGAAGCAGCATTCAGCGGAGAAT
LOC_Os01g53870
OsAffx.24046.1.S1_at--512--1151Chr01:31296734..31296758 (25 bp)
AGTCTTTTGAATACTTGTATCTTGA
LOC_Os01g53870
Target Sequence 
ACCTGGTGTAGGTGATGGATTTGCTAGTGCCAGTCCAGGTGCTGGACTTAGTGCTAGTGCTAGTCCAATTCCTGGATTTG
GTGCTAGTGCCAGTCCAGGTGCTGGGCTTGGTGCTGGTCTATTTAGCAGGAGAACTTCTGCTACTGCTTTGATTCAAGCT
GTTTATTCTACTGCTAACATGAATGCATCTGAGTTGTTTGCCTATTTTGACAGTGACACAGTCAACCAATTCGATGACGA
CTTCAATATCCTTAACTGGTGGCATGAGCACAAACACACCTATCCTATTCTTTCCCTCTTAGATAGAGATGTTTTGAATG
TTCCTGTTTCTACTATATCGTTGGAATATGCTTTTAGCTTAACTGGCAGGATCATCGAGGATCGACGGCGGTGTCTAGGT
CCTGCCATGGTGCAAGCTCTGGCATTGATCAAAGATTGGGAGCAAGCAGAATCAAAGAAGCAGCATTCAGCGGAGAATAA
AGAGCTTATTAAGTCTTTTGAATACTTGTATCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24046.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis