Browse Element(s) Details


OsAffx.11592.2.S1_at

Description tigr:9629.m05241
TID=OsAffx.11592.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5385011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53810OsAffx.23781.1.S1_x_at10/111+31260448..31264223Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53810OsAffx.23781.1.S1_at10/111+31260448..31264223Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53810Os.36961.2.S1_x_at6/111+31260448..31264223Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53810Os.36961.1.S1_x_at5/111+31260448..31264223Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53820NANA1+31266539..31267841expressed protein
LOC_Os01g53830NANA1+31273196..31274451transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g53840Os.2000.2.S1_x_at10/111+31276227..31281586protein kinase family protein, putative, expressed
LOC_Os01g53850OsAffx.11592.2.S1_at11/111+31282309..31283241hypothetical protein
LOC_Os01g53860OsAffx.11593.2.S1_s_at11/111+31288752..31292062expressed protein
LOC_Os01g53870OsAffx.24046.1.S1_at11/111+31294495..31296828hAT family dimerisation domain containing protein
LOC_Os01g53870OsAffx.24046.2.S1_x_at4/111+31294495..31296828hAT family dimerisation domain containing protein
LOC_Os01g53870OsAffx.24046.7.S1_x_at3/111+31294495..31296828hAT family dimerisation domain containing protein
LOC_Os01g53870OsAffx.24046.3.S1_x_at2/111+31294495..31296828hAT family dimerisation domain containing protein
LOC_Os01g53870Os.53053.1.S1_at2/111+31294495..31296828hAT family dimerisation domain containing protein
LOC_Os01g53880Os.11608.1.S1_at11/111+31302613..31306303AUX/IAA family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11592.2.S1_at--827--2192Chr04:25202458..25202482 (25 bp)
ACAAAGGCGATGTCGAGAAGCCGCT
NONE
OsAffx.11592.2.S1_at--97--4531Chr01:31283168..31283192 (25 bp)
GCCGCTGCAGGAAGACGAGTGATCA
LOC_Os01g53850
OsAffx.11592.2.S1_at--311--5371Chr01:31283160..31283182 (23 bp)
GAAGACGAGTGATCAGATGACGGAA
LOC_Os01g53850
OsAffx.11592.2.S1_at--391--9031Chr01:31282659..31282683 (25 bp)
TGCAGCCGGCGAGCGTGAACAGCGA
LOC_Os01g53850
OsAffx.11592.2.S1_at--803--8974Chr04:25203001..25203025 (25 bp)
TGAACAGCGAGTTGCGGACGCCGAT
NONE
OsAffx.11592.2.S1_at--445--3393Chr03:1991075..1991097 (23 bp)
CAGCGAGTTGCGGACGCCGATGCCT
NONE
OsAffx.11592.2.S1_at--1099--1771Chr01:31282627..31282651 (25 bp)
ACGCCGATGCCTGGCAGGTAGCCGT
LOC_Os01g53850
OsAffx.11592.2.S1_at--923--591Chr01:31282621..31282645 (25 bp)
ATGCCTGGCAGGTAGCCGTGCGCCG
LOC_Os01g53850
OsAffx.11592.2.S1_at--123--7672Chr04:25203060..25203081 (22 bp)
GGGTCAGGGCTCTGCGCCAGGTCGA
NONE
OsAffx.11592.2.S1_at--896--8172Chr04:25203294..25203318 (25 bp)
GGAAGGAGGGTTAGGCATCGTCGCC
NONE
OsAffx.11592.2.S1_at--1088--10431Chr01:31282341..31282365 (25 bp)
TTAGGCATCGTCGCCGTGACGAGGA
LOC_Os01g53850
Target Sequence 
ACAAAGGCGATGTCGAGAAGCCGCTGCAGGAAGACGAGTGATCAGATGACGGAAGGTGAGGAGGAAGCCGAGCAAGCTGC
AGCCGGCGAGCGTGAACAGCGAGTTGCGGACGCCGATGCCTGGCAGGTAGCCGTGCGCCGCCGCCTTGGCCGGGTCAGGG
CTCTGCGCCAGGTCGAGAAGCCGCTGCAGGAAGAGGAGTGGTCGGACGACGGTGAGTTCATCGAGCTGGAAGGAGGGTTA
GGCATCGTCGCCGTGACGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11592.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis