Browse Element(s) Details


Os.36961.1.S1_x_at

Description gb:AK062281.1
DB_XREF= gi:32972299
TID=Os.36961.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.36961 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) peptidase-like protein (P0638D12.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-100-C05, full insert sequence.
FL= gb:AK062281.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g538105/11Transferrin receptor-like dimerisation domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53779Os.50571.1.A1_at11/111+31236278..31243324expressed protein
LOC_Os01g53779Os.46986.1.S1_at2/111+31236278..31243324expressed protein
LOC_Os01g53790Os.57027.1.S1_x_at11/111+31244952..31248187expressed protein
LOC_Os01g53790Os.27509.1.S1_at11/111+31244952..31248187expressed protein
LOC_Os01g53800OsAffx.2326.2.S1_at11/111+31249986..31254274Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53800OsAffx.2326.1.S1_x_at11/111+31249986..31254274Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53800OsAffx.2326.1.S1_at11/111+31249986..31254274Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53810OsAffx.23781.1.S1_x_at10/111+31260448..31264223Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53810OsAffx.23781.1.S1_at10/111+31260448..31264223Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53810Os.36961.2.S1_x_at6/111+31260448..31264223Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53810Os.36961.1.S1_x_at5/111+31260448..31264223Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53820NANA1+31266539..31267841expressed protein
LOC_Os01g53830NANA1+31273196..31274451transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g53840Os.2000.2.S1_x_at10/111+31276227..31281586protein kinase family protein, putative, expressed
LOC_Os01g53850OsAffx.11592.2.S1_at11/111+31282309..31283241hypothetical protein
LOC_Os01g53860OsAffx.11593.2.S1_s_at11/111+31288752..31292062expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009640biological_processphotomorphogenesis
GO:0009910biological_processnegative regulation of flower development
GO:0005739cellular_componentmitochondrion
GO:0008233molecular_functionpeptidase activity
GO:0009980molecular_functionglutamate carboxypeptidase activity
GO:0016805molecular_functiondipeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36961.1.S1_x_at--119--6511Chr01:31260607..31260631 (25 bp)
GATATACGCATCGTCTGACCAAGAC
LOC_Os01g53810
Os.36961.1.S1_x_at--1024--2931Chr01:31260570..31260594 (25 bp)
AAGGCATTCCCTGGTATCGTGTCGG
LOC_Os01g53810
Os.36961.1.S1_x_at--993--8251Chr01:31260506..31260530 (25 bp)
GGCAGCTCCTGCAGCATGAAATTTA
LOC_Os01g53810
Os.36961.1.S1_x_at--101--9011Chr01:31260475..31260499 (25 bp)
TGCAAGGGCTGTGTCCAAGGCTTCA
LOC_Os01g53810
Os.36961.1.S1_x_at--1021--8291Chr01:31260457..31260481 (25 bp)
GGCTTCAGCTGTCCTTGATGGTAGA
LOC_Os01g53810
Os.36961.1.S1_x_at--649--3431Chr01:31260370..31260394 (25 bp)
CAGATACCAGCTCTACACGTAGTTT
NONE
Os.36961.1.S1_x_at--1129--8656Chr07:6909229..6909248 (20 bp)
TGTGGAGATCTTTTACGGTGCTTGA
NONE
Os.36961.1.S1_x_at--388--9931Chr01:31260203..31260227 (25 bp)
TACGGTGCTTGAGAGGTATCCCAGG
NONE
Os.36961.1.S1_x_at--923--9931Chr01:31260187..31260211 (25 bp)
TATCCCAGGGACCTCCTAAACTAAT
NONE
Os.36961.1.S1_x_at--754--252Chr06:13012767..13012791 (25 bp)
ATATCCACCATTGATTCCTAAAGGG
NONE
Os.36961.1.S1_x_at--687--4871Chr01:31260100..31260124 (25 bp)
GCTTAGTAATTGTCCAATCCCCATC
NONE
Target Sequence 
GATATACGCATCGTCTGACCAAGACGACTGGGGCACCAAGGCATTCCCTGGTATCGTGTCGGCCATCGACAAGGCAAATA
AGCTCAACACAACCGAATCTTGGCAGCTCCTGCAGCATGAAATTTACAGGGCTGCAAGGGCTGTGTCCAAGGCTTCAGCT
GTCCTTGATGGTAGACTAACATGAGAGTNCATAAATTAAGATCACTACACGATTCCATTTTGTGCAGTTTAAAGTACCAG
ATACCAGCTCTACACGTAGTTTTGTGCAGTTTAAAGTACCAGATACCAGNTCTACACGTAGTTACGATGATATGATATAG
TTACACAAGTACCTGTGAAGATACTGAAGAACTATCCTCAGTTAGTATCATAATTATTGATGTTAATGAATNTGTGGAGA
TCTTTTACGGTGCTTGAGAGGTATCCCAGGGACCTCCTAAACTAATTAATATCCACCATTGATTCCTAAAGGGTAATTTA
GGATTATGAAATAATATTAACAAGGGTAGCTTAGTAATTGTCCAATCCCCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36961.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis