Browse Element(s) Details


OsAffx.2326.1.S1_x_at

Description gb:NM_191141.1
DB_XREF= gi:34909365
GEN=P0638D12.15
TID=OsAffx.2326.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) peptidase-like protein (P0638D12.15), mRNA.
PROD=peptidase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5380011/11Transferrin receptor-like dimerisation domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53750Os.36264.1.S1_x_at11/111+31224595..31227916Glycosyl hydrolases family 17 protein, expressed
LOC_Os01g53750Os.36264.1.S1_at11/111+31224595..31227916Glycosyl hydrolases family 17 protein, expressed
LOC_Os01g53760OsAffx.2325.1.S1_at11/111+31229592..31229906hypothetical protein
LOC_Os01g53770Os.57329.1.S1_at10/111+31232433..31233107expressed protein
LOC_Os01g53779Os.50571.1.A1_at11/111+31236278..31243324expressed protein
LOC_Os01g53779Os.46986.1.S1_at2/111+31236278..31243324expressed protein
LOC_Os01g53790Os.57027.1.S1_x_at11/111+31244952..31248187expressed protein
LOC_Os01g53790Os.27509.1.S1_at11/111+31244952..31248187expressed protein
LOC_Os01g53800OsAffx.2326.2.S1_at11/111+31249986..31254274Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53800OsAffx.2326.1.S1_x_at11/111+31249986..31254274Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53800OsAffx.2326.1.S1_at11/111+31249986..31254274Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53810OsAffx.23781.1.S1_x_at10/111+31260448..31264223Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53810OsAffx.23781.1.S1_at10/111+31260448..31264223Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53810Os.36961.2.S1_x_at6/111+31260448..31264223Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53810Os.36961.1.S1_x_at5/111+31260448..31264223Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53820NANA1+31266539..31267841expressed protein
LOC_Os01g53830NANA1+31273196..31274451transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g53840Os.2000.2.S1_x_at10/111+31276227..31281586protein kinase family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009640biological_processphotomorphogenesis
GO:0009910biological_processnegative regulation of flower development
GO:0005739cellular_componentmitochondrion
GO:0008233molecular_functionpeptidase activity
GO:0009980molecular_functionglutamate carboxypeptidase activity
GO:0016805molecular_functiondipeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2326.1.S1_x_at--821--6371Chr01:31251359..31251383 (25 bp)
GATCCTGACAATTCATCTCAAGCCG
LOC_Os01g53800
OsAffx.2326.1.S1_x_at--793--8091Chr01:31250957..31250981 (25 bp)
GGACCAGGCTATCCCATATATCATT
LOC_Os01g53800
OsAffx.2326.1.S1_x_at--504--1291Chr01:31250895..31250919 (25 bp)
AGATCCAGGGTTCAGTAGGCACGCT
LOC_Os01g53800
OsAffx.2326.1.S1_x_at--747--10091Chr01:31250612..31250904 (25 bp)
TAGGCACGCTGCAGGCATATACGAA
LOC_Os01g53800
OsAffx.2326.1.S1_x_at--1158--7611Chr01:31250566..31250590 (25 bp)
GGGAACGGCTATCAGTTGCTCTCCA
LOC_Os01g53800
OsAffx.2326.1.S1_x_at--426--2311Chr01:31250388..31250412 (25 bp)
AAAGGCAACTGTCGAGCAACCAGCT
LOC_Os01g53800
OsAffx.2326.1.S1_x_at--918--7911Chr01:31250357..31250381 (25 bp)
GGATTCAATGAAAATACGGTCGCTC
LOC_Os01g53800
OsAffx.2326.1.S1_x_at--427--2231Chr01:31250346..31250370 (25 bp)
AAATACGGTCGCTCAATGACCGGCT
LOC_Os01g53800
OsAffx.2326.1.S1_x_at--553--691Chr01:31250331..31250355 (25 bp)
ATGACCGGCTCATGCAGGCAGAACG
LOC_Os01g53800
OsAffx.2326.1.S1_x_at--849--5571Chr01:31250114..31250138 (25 bp)
GAAAGTGCATCTTATCCTGGTGTAG
LOC_Os01g53800
OsAffx.2326.1.S1_x_at--375--1251Chr01:31250026..31250050 (25 bp)
AGATTCACAGAGTCGCGAGGGCAAT
LOC_Os01g53800
Target Sequence 
GATCCTGACAATTCATCTCAAGCCGTGTATGATTCATGGGTCAAATCCAACATTTCCCCCTTGGACCAGGCTATCCCATA
TATCATTCGTTATACGATGACTTCGTGTGGATGGAGAAATTCGGAGATCCAGGGTTCAGTAGGCACGCTGCAGGCATATA
CGAAGGTAGTAGAGAATGAAGTAAGGGGAACGGCTATCAGTTGCTCTCCACTGCACAATGCAATTAGAGCTCTGAAAACG
GCAGCTACCAAAGTAAATGGCGAGAGAAAGGAGCTTCAAAGGCAACTGTCGAGCAACCAGCTGAAAAAGGATTCAATGAA
AATACGGTCGCTCAATGACCGGCTCATGCAGGCAGAACGGGCATTCACTAACAGGGAAGGCCTGTTCAAGCGAGAATGGT
TCAAACATCTGGTCTATGGACCATCAGAACAGAATGACTGGGAAAGTGCATCTTATCCTGGTGTAGAAAATGCTATAGCT
AGTGCAAGGAAGGAAAACACTACAGAATCGTGGAAGTTTGTACAGCACGAGATTCACAGAGTCGCGAGGGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2326.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis