Browse Element(s) Details


OsAffx.2325.1.S1_at

Description tigr:9629.m05232
TID=OsAffx.2325.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5376011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53720Os.8015.1.S1_at1/111+31205940..31212133expressed protein
LOC_Os01g53730Os.1993.1.S1_at11/111+31212020..31213186expressed protein
LOC_Os01g53740OsAffx.23779.1.S1_at11/111+31216647..31217504hypothetical protein
LOC_Os01g53750Os.36264.1.S1_x_at11/111+31224595..31227916Glycosyl hydrolases family 17 protein, expressed
LOC_Os01g53750Os.36264.1.S1_at11/111+31224595..31227916Glycosyl hydrolases family 17 protein, expressed
LOC_Os01g53760OsAffx.2325.1.S1_at11/111+31229592..31229906hypothetical protein
LOC_Os01g53770Os.57329.1.S1_at10/111+31232433..31233107expressed protein
LOC_Os01g53779Os.50571.1.A1_at11/111+31236278..31243324expressed protein
LOC_Os01g53779Os.46986.1.S1_at2/111+31236278..31243324expressed protein
LOC_Os01g53790Os.57027.1.S1_x_at11/111+31244952..31248187expressed protein
LOC_Os01g53790Os.27509.1.S1_at11/111+31244952..31248187expressed protein
LOC_Os01g53800OsAffx.2326.2.S1_at11/111+31249986..31254274Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53800OsAffx.2326.1.S1_x_at11/111+31249986..31254274Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53800OsAffx.2326.1.S1_at11/111+31249986..31254274Transferrin receptor-like dimerisation domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2325.1.S1_at--73--8891Chr01:31229811..31229835 (25 bp)
TGAGGAACAGTCGTGGGCCAGCGGA
LOC_Os01g53760
OsAffx.2325.1.S1_at--637--10011Chr01:31229776..31229800 (25 bp)
TAGCATGCGTAGGACCTGCGGAGCT
LOC_Os01g53760
OsAffx.2325.1.S1_at--530--9431Chr01:31229746..31229770 (25 bp)
TCGGGCGGCGCGCTGAACACATACC
LOC_Os01g53760
OsAffx.2325.1.S1_at--37--8411Chr01:31229740..31229764 (25 bp)
GGCGCGCTGAACACATACCGGAATA
LOC_Os01g53760
OsAffx.2325.1.S1_at--246--3571Chr01:31229727..31229751 (25 bp)
CATACCGGAATATTCTATCGTGACC
LOC_Os01g53760
OsAffx.2325.1.S1_at--79--8211Chr01:31229721..31229745 (25 bp)
GGAATATTCTATCGTGACCGCCCTC
LOC_Os01g53760
OsAffx.2325.1.S1_at--646--3111Chr01:31229719..31229743 (25 bp)
AATATTCTATCGTGACCGCCCTCGG
LOC_Os01g53760
OsAffx.2325.1.S1_at--943--9411Chr01:31229698..31229722 (25 bp)
TCGGCCAGGACTTTGGTCCCCTGCG
LOC_Os01g53760
OsAffx.2325.1.S1_at--1131--8311Chr01:31229641..31229665 (25 bp)
GGCTCCGTCCTCACTGTAGAATCGA
LOC_Os01g53760
OsAffx.2325.1.S1_at--533--9291Chr01:31229638..31229662 (25 bp)
TCCGTCCTCACTGTAGAATCGATGG
LOC_Os01g53760
OsAffx.2325.1.S1_at--978--5253Chr12:22837901..22837999 (25 bp)
GAATCGATGGAGCAATGCAGGCCAT
NONE
Target Sequence 
TGAGGAACAGTCGTGGGCCAGCGGAGGTGGAGAGGTAGCATGCGTAGGACCTGCGGAGCTGCTCGTCGGGCGGCGCGCTG
AACACATACCGGAATATTCTATCGTGACCGCCCTCGGCCAGGACTTTGGTCCCCTGCGCGACCCTCCCCACGGCCGCCTC
CCCGATGCTCGGCTCCGTCCTCACTGTAGAATCGATGGAGCAATGCAGGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2325.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis