Browse Element(s) Details


Os.36264.1.S1_at

Description gb:AK063960.1
DB_XREF= gi:32973978
TID=Os.36264.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36264 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0638D12.12 (P0638D12.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-123-G07, full insert sequence.
FL= gb:AK063960.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5375011/11Glycosyl hydrolases family 17 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53720Os.8015.1.S1_at1/111+31205940..31212133expressed protein
LOC_Os01g53730Os.1993.1.S1_at11/111+31212020..31213186expressed protein
LOC_Os01g53740OsAffx.23779.1.S1_at11/111+31216647..31217504hypothetical protein
LOC_Os01g53750Os.36264.1.S1_x_at11/111+31224595..31227916Glycosyl hydrolases family 17 protein, expressed
LOC_Os01g53750Os.36264.1.S1_at11/111+31224595..31227916Glycosyl hydrolases family 17 protein, expressed
LOC_Os01g53760OsAffx.2325.1.S1_at11/111+31229592..31229906hypothetical protein
LOC_Os01g53770Os.57329.1.S1_at10/111+31232433..31233107expressed protein
LOC_Os01g53779Os.50571.1.A1_at11/111+31236278..31243324expressed protein
LOC_Os01g53779Os.46986.1.S1_at2/111+31236278..31243324expressed protein
LOC_Os01g53790Os.57027.1.S1_x_at11/111+31244952..31248187expressed protein
LOC_Os01g53790Os.27509.1.S1_at11/111+31244952..31248187expressed protein
LOC_Os01g53800OsAffx.2326.2.S1_at11/111+31249986..31254274Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53800OsAffx.2326.1.S1_x_at11/111+31249986..31254274Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53800OsAffx.2326.1.S1_at11/111+31249986..31254274Transferrin receptor-like dimerisation domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36264.1.S1_at--311--8491Chr01:31227386..31227516 (25 bp)
TGGCTGCCGGGAGTAAGATGAGCAC
LOC_Os01g53750
Os.36264.1.S1_at--1053--10251Chr01:31227714..31227738 (25 bp)
TTTGTTTGTCATAGTTAGCGGAGTG
LOC_Os01g53750
Os.36264.1.S1_at--109--10791Chr01:31227719..31227743 (25 bp)
TTGTCATAGTTAGCGGAGTGTTGTA
LOC_Os01g53750
Os.36264.1.S1_at--140--10011Chr01:31227729..31227753 (25 bp)
TAGCGGAGTGTTGTAGTATGACTAT
LOC_Os01g53750
Os.36264.1.S1_at--935--8151Chr01:31227760..31227784 (25 bp)
GGAAACTAGGAATTCTCTTGCCTTG
LOC_Os01g53750
Os.36264.1.S1_at--173--2031Chr01:31227764..31227788 (25 bp)
ACTAGGAATTCTCTTGCCTTGCGCG
LOC_Os01g53750
Os.36264.1.S1_at--844--2131Chr01:31227790..31227814 (25 bp)
ACAGCATATATGAGTTAGCATTATG
LOC_Os01g53750
Os.36264.1.S1_at--739--6771Chr01:31227803..31227827 (25 bp)
GTTAGCATTATGAACTAGGAACATT
LOC_Os01g53750
Os.36264.1.S1_at--855--10031Chr01:31227811..31227835 (25 bp)
TATGAACTAGGAACATTGCAGATGA
LOC_Os01g53750
Os.36264.1.S1_at--1135--5031Chr01:31227828..31227852 (25 bp)
GCAGATGATGTCTCTTGGTAGTTAT
LOC_Os01g53750
Os.36264.1.S1_at--471--6271Chr01:31227834..31227858 (25 bp)
GATGTCTCTTGGTAGTTATAATCCT
LOC_Os01g53750
Target Sequence 
TGGCTGCCGGGAGTAAGATGAGCACNACANATTCATCCNACNTTCCAGTTCAAAGTGGGTTCAGCCCATCGCGATTCGAC
AAAAACTTCTACCTGTTGTTCTCCATGCTACCCATTATGATNGCTGCATGCATTGTGTGATATGTTCGGAGAGAGATCTT
GCAGAAGCCTTTTGCCATGGAGGATGGAACGGTAATCGCCTGATACTGGAAACCAGTACTGNTTTGTTTGTCATAGTTAG
CGGAGTGTTGTAGTATGACTATGTAGTAGGAAACTAGGAATTCTCTTGCCTTGCGCGNACAGCATATATGAGTTAGCATT
ATGAACTAGGAACATTGCAGATGATGTCTCTTGGTAGTTATAATCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36264.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis