Browse Element(s) Details


Os.57027.1.S1_x_at

Description gb:AK110766.1
DB_XREF= gi:32995975
TID=Os.57027.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57027 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-171-A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-171-A06, full insert sequence.
FL= gb:AK110766.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5379011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53750Os.36264.1.S1_x_at11/111+31224595..31227916Glycosyl hydrolases family 17 protein, expressed
LOC_Os01g53750Os.36264.1.S1_at11/111+31224595..31227916Glycosyl hydrolases family 17 protein, expressed
LOC_Os01g53760OsAffx.2325.1.S1_at11/111+31229592..31229906hypothetical protein
LOC_Os01g53770Os.57329.1.S1_at10/111+31232433..31233107expressed protein
LOC_Os01g53779Os.50571.1.A1_at11/111+31236278..31243324expressed protein
LOC_Os01g53779Os.46986.1.S1_at2/111+31236278..31243324expressed protein
LOC_Os01g53790Os.57027.1.S1_x_at11/111+31244952..31248187expressed protein
LOC_Os01g53790Os.27509.1.S1_at11/111+31244952..31248187expressed protein
LOC_Os01g53800OsAffx.2326.2.S1_at11/111+31249986..31254274Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53800OsAffx.2326.1.S1_x_at11/111+31249986..31254274Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53800OsAffx.2326.1.S1_at11/111+31249986..31254274Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53810OsAffx.23781.1.S1_x_at10/111+31260448..31264223Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53810OsAffx.23781.1.S1_at10/111+31260448..31264223Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53810Os.36961.2.S1_x_at6/111+31260448..31264223Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53810Os.36961.1.S1_x_at5/111+31260448..31264223Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53820NANA1+31266539..31267841expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57027.1.S1_x_at--99--9451Chr01:31247580..31247604 (25 bp)
TCGGCTACCGGCTCGAGCTGGTGTT
LOC_Os01g53790
Os.57027.1.S1_x_at--682--5871Chr01:31247594..31247618 (25 bp)
GAGCTGGTGTTCGACTCGGGCCCCA
LOC_Os01g53790
Os.57027.1.S1_x_at--842--1651Chr01:31247661..31247685 (25 bp)
AGCGCGGCGGCCAGTTCGTCATCGA
LOC_Os01g53790
Os.57027.1.S1_x_at--761--4251Chr01:31247733..31247757 (25 bp)
CCGGCGGCTTCGTGATGGGCTCCAC
LOC_Os01g53790
Os.57027.1.S1_x_at--421--1511Chr01:31247808..31247832 (25 bp)
AGCACGCCACGTGCATGGGCGACGT
LOC_Os01g53790
Os.57027.1.S1_x_at--869--9051Chr01:31247870..31247894 (25 bp)
TGCATGGACGCCTGCAAGCTCTTCT
LOC_Os01g53790
Os.57027.1.S1_x_at--1125--2691Chr01:31247885..31247909 (25 bp)
AAGCTCTTCTCGCAGAGGCTCAGGA
LOC_Os01g53790
Os.57027.1.S1_x_at--464--5891Chr01:31247912..31247936 (25 bp)
GAGCTGTGCCATGATCAAGAGGACT
LOC_Os01g53790
Os.57027.1.S1_x_at--42--5711Chr01:31247933..31247957 (25 bp)
GACTAGCAGGGAGACGAAACGGAAT
LOC_Os01g53790
Os.57027.1.S1_x_at--11--4111Chr01:31247947..31247971 (25 bp)
CGAAACGGAATCAAGTGCATGTACT
LOC_Os01g53790
Os.57027.1.S1_x_at--695--6331Chr01:31247996..31248020 (25 bp)
GATGCATGCGATCACTTTCATGATT
LOC_Os01g53790
Target Sequence 
TCGGCTACCGGCTCGAGCTGGTGTTCGACTCGGGCCCCACCGAGTGCGCCGTCCCCATCGCCGAGTCGTCCATCAGCACC
AAGCGCGGCGGCCAGTTCGTCATCGACCCGGCCACGTTCCCCGTGGGCGCCGCCGGCGCCGCGTGGCCGTTCGCCGGCGG
CTTCGTGATGGGCTCCACGGCGGAGGGCGAGGGGAGGGCCAGCCGGCCCACCGTGCAGGTCGGCGTGCAGCACGCCACGT
GCATGGGCGACGTGGCGCTGTTCGTCGCGCTCGCCGCCGCCGTCGACCTCTGCATGGACGCCTGCAAGCTCTTCTCGCAG
AGGCTCAGGAAGGAGCTGTGCCATGATCAAGAGGACTAGCAGGGAGACGAAACGGAATCAAGTGCATGTACTTGGGGGTT
TGGCTTGTGAAGTTGTGATGCATGCGATCACTTTCATGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57027.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis