Browse Element(s) Details


OsAffx.23781.1.S1_x_at

Description tigr:9629.m05237
TID=OsAffx.23781.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Peptidase family M28, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5381010/11Transferrin receptor-like dimerisation domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53779Os.50571.1.A1_at11/111+31236278..31243324expressed protein
LOC_Os01g53779Os.46986.1.S1_at2/111+31236278..31243324expressed protein
LOC_Os01g53790Os.57027.1.S1_x_at11/111+31244952..31248187expressed protein
LOC_Os01g53790Os.27509.1.S1_at11/111+31244952..31248187expressed protein
LOC_Os01g53800OsAffx.2326.2.S1_at11/111+31249986..31254274Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53800OsAffx.2326.1.S1_x_at11/111+31249986..31254274Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53800OsAffx.2326.1.S1_at11/111+31249986..31254274Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53810OsAffx.23781.1.S1_x_at10/111+31260448..31264223Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53810OsAffx.23781.1.S1_at10/111+31260448..31264223Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53810Os.36961.2.S1_x_at6/111+31260448..31264223Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53810Os.36961.1.S1_x_at5/111+31260448..31264223Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53820NANA1+31266539..31267841expressed protein
LOC_Os01g53830NANA1+31273196..31274451transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g53840Os.2000.2.S1_x_at10/111+31276227..31281586protein kinase family protein, putative, expressed
LOC_Os01g53850OsAffx.11592.2.S1_at11/111+31282309..31283241hypothetical protein
LOC_Os01g53860OsAffx.11593.2.S1_s_at11/111+31288752..31292062expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009640biological_processphotomorphogenesis
GO:0009910biological_processnegative regulation of flower development
GO:0005739cellular_componentmitochondrion
GO:0008233molecular_functionpeptidase activity
GO:0009980molecular_functionglutamate carboxypeptidase activity
GO:0016805molecular_functiondipeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23781.1.S1_x_at--822--771Chr01:31261020..31261044 (25 bp)
ATGTCCTGTCAGTTTCGCTCCTTTA
LOC_Os01g53810
OsAffx.23781.1.S1_x_at--317--6851Chr01:31261009..31261033 (25 bp)
GTTTCGCTCCTTTACACAAGTCAAT
LOC_Os01g53810
OsAffx.23781.1.S1_x_at--528--851Chr01:31260769..31260793 (25 bp)
ATGGCGGAGCGAGGCTTCATCAACC
LOC_Os01g53810
OsAffx.23781.1.S1_x_at--580--10511Chr01:31260754..31260778 (25 bp)
TTCATCAACCGGGAAGGGCTCGACG
LOC_Os01g53810
OsAffx.23781.1.S1_x_at--768--5731Chr01:31260733..31260757 (25 bp)
GACGGTAGGCCGTGGTACAAACATA
LOC_Os01g53810
OsAffx.23781.1.S1_x_at--120--6511Chr01:31260607..31260631 (25 bp)
GATATACGCATCGTCTGACCAAGAC
LOC_Os01g53810
OsAffx.23781.1.S1_x_at--1022--2931Chr01:31260570..31260594 (25 bp)
AAGGCATTCCCTGGTATCGTGTCGG
LOC_Os01g53810
OsAffx.23781.1.S1_x_at--992--8251Chr01:31260506..31260530 (25 bp)
GGCAGCTCCTGCAGCATGAAATTTA
LOC_Os01g53810
OsAffx.23781.1.S1_x_at--100--9011Chr01:31260475..31260499 (25 bp)
TGCAAGGGCTGTGTCCAAGGCTTCA
LOC_Os01g53810
OsAffx.23781.1.S1_x_at--1022--8291Chr01:31260457..31260481 (25 bp)
GGCTTCAGCTGTCCTTGATGGTAGA
LOC_Os01g53810
OsAffx.23781.1.S1_x_at--342--4351Chr01:31260321..31260346 (25 bp)
CCAGCTCTACACGTATTACGATGAT
NONE
Target Sequence 
ATGTCCTGTCAGTTTCGCTCCTTTACACAAGTCAATTGACCAGCTTAGAAAAGCAGCCAACAAAATTCACAAAGAAAAGA
TGATGCTACAAGCAGAAAACTGGAGCCTAAAAACGAGAGCGTACACAGTAAAAGTCAGAGATATCAACGACCGGTTAATG
ATGGCGGAGCGAGGCTTCATCAACCGGGAAGGGCTCGACGGTAGGCCGTGGTACAAACATATGATATACGCATCGTCTGA
CCAAGACGACTGGGGCACCAAGGCATTCCCTGGTATCGTGTCGGCCATCGACAAGGCAAATAAGCTCAACACAACCGAAT
CTTGGCAGCTCCTGCAGCATGAAATTTACAGGGCTGCAAGGGCTGTGTCCAAGGCTTCAGCTGTCCTTGATGGTAGACTA
ACATGAGAGTACATAAATTAAGATCACTACACGATTCCATTTTGTGCAGTTTAAAGTACCAGATACCAGCTCTACACGTA
TTACGATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23781.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis