Browse Element(s) Details


Os.57329.1.S1_at

Description gb:AK111315.1
DB_XREF= gi:32996524
TID=Os.57329.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57329 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-181-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-181-C08, full insert sequence.
FL= gb:AK111315.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5377010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53720Os.8015.1.S1_at1/111+31205940..31212133expressed protein
LOC_Os01g53730Os.1993.1.S1_at11/111+31212020..31213186expressed protein
LOC_Os01g53740OsAffx.23779.1.S1_at11/111+31216647..31217504hypothetical protein
LOC_Os01g53750Os.36264.1.S1_x_at11/111+31224595..31227916Glycosyl hydrolases family 17 protein, expressed
LOC_Os01g53750Os.36264.1.S1_at11/111+31224595..31227916Glycosyl hydrolases family 17 protein, expressed
LOC_Os01g53760OsAffx.2325.1.S1_at11/111+31229592..31229906hypothetical protein
LOC_Os01g53770Os.57329.1.S1_at10/111+31232433..31233107expressed protein
LOC_Os01g53779Os.50571.1.A1_at11/111+31236278..31243324expressed protein
LOC_Os01g53779Os.46986.1.S1_at2/111+31236278..31243324expressed protein
LOC_Os01g53790Os.57027.1.S1_x_at11/111+31244952..31248187expressed protein
LOC_Os01g53790Os.27509.1.S1_at11/111+31244952..31248187expressed protein
LOC_Os01g53800OsAffx.2326.2.S1_at11/111+31249986..31254274Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53800OsAffx.2326.1.S1_x_at11/111+31249986..31254274Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53800OsAffx.2326.1.S1_at11/111+31249986..31254274Transferrin receptor-like dimerisation domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57329.1.S1_at--434--9391Chr01:31232989..31233013 (25 bp)
TCGATCGCTCGCTCGGACGAGATAG
LOC_Os01g53770
Os.57329.1.S1_at--981--6851Chr01:31232816..31232840 (25 bp)
GTTTGACCGAGGTTGGTAGCGCCAC
LOC_Os01g53770
Os.57329.1.S1_at--240--6991Chr01:31232665..31232689 (25 bp)
GTACGATCGATTTGCGTGATCCGAA
LOC_Os01g53770
Os.57329.1.S1_at--91--5711Chr01:31232648..31232672 (25 bp)
GATCCGAAACGTTCTGGGCCGGTCG
LOC_Os01g53770
Os.57329.1.S1_at--256--7531Chr01:31232609..31232633 (25 bp)
GTGGACGGCTGCGTTTCCCAACAAA
LOC_Os01g53770
Os.57329.1.S1_at--974--10631Chr01:31232581..31232605 (25 bp)
TTCGCTCGATCAATGGTGGAAGGTT
LOC_Os01g53770
Os.57329.1.S1_at--667--6011Chr01:31232545..31232569 (25 bp)
GAGAGAGCGTGCGTACGTGCAACCC
LOC_Os01g53770
Os.57329.1.S1_at--760--31Chr01:31232503..31232527 (25 bp)
ATTGTCGTGGCTGACCGGTCGCAGA
LOC_Os01g53770
Os.57329.1.S1_at--954--8311Chr01:31232464..31232488 (25 bp)
GGCTGCCGCTTTGTAGTTCTGGAAC
LOC_Os01g53770
Os.57329.1.S1_at--981--6711Chr01:31232449..31232473 (25 bp)
GTTCTGGAACCGATCTAATCAGCCA
LOC_Os01g53770
Os.57329.1.S1_at--709--3071Chr01:31232433..31232457 (25 bp)
AATCAGCCAGTTCTAAGTTGCATTC
NONE
Target Sequence 
TCGATCGCTCGCTCGGACGAGATAGGCCGGGTTCGCTCGCCTCTCGACCGAGCGAACGGCGCATCGGCGCATGTGGGTGC
GCGCGTTAGGTGCGTGCAACGCCTCGCGCACAGCGGTACACGCAGCGCATGTGCCCGGCGATGGCTGGCCCGCCTCCGGT
CGGTTGGCCGCCGGTTTGACCGAGGTTGGTAGCGCCACTGGATTGGGGCGCCCCATCCGCCGCGCGCTTGGACCTGTGGT
GGTGGTTACATCGGTTCGAGACCGAGGTGCATGCGGAGGGCCATGCATGCATGGGTGGTGGTCGTTCGCGATCGGGCGCC
GGATGTACGATCGATTTGCGTGATCCGAAACGTTCTGGGCCGGTCGGATCGTGATGCTCGGTGGACGGCTGCGTTTCCCA
ACAAATGCTTCGCTCGATCAATGGTGGAAGGTTGTGTGAGACTTGAGAGAGCGTGCGTACGTGCAACCCTCCAGCCCGAT
CCGGCGATTGTCGTGGCTGACCGGTCGCAGATTGGCTGAGGATGCGGCTGCCGCTTTGTAGTTCTGGAACCGATCTAATC
AGCCAGTTCTAAGTTGCATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57329.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis