Browse Element(s) Details


Os.53053.1.S1_at

Description gb:AK070610.1
DB_XREF= gi:32980634
TID=Os.53053.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53053 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023061G14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023061G14, full insert sequence.
FL= gb:AK070610.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3219011/11BED zinc finger family protein, expressed
LOC_Os01g538702/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g32119OsAffx.22708.5.S1_x_at1/113+18334600..18341422retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g32119OsAffx.22708.2.S1_x_at1/113+18334600..18341422retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g32140NANA3+18342264..18343372hypothetical protein
LOC_Os03g32150Os.6224.2.S1_at8/113+18345237..18347140expressed protein
LOC_Os03g32150Os.6224.1.S1_at1/113+18345237..18347140expressed protein
LOC_Os03g32160Os.18942.2.S1_at11/113+18351938..18356498calmodulin-binding protein, putative, expressed
LOC_Os03g32160Os.18942.3.A1_a_at11/113+18351938..18356498calmodulin-binding protein, putative, expressed
LOC_Os03g32170Os.11440.1.S1_at8/113+18360183..18361745progesterone 5-beta-reductase, putative, expressed
LOC_Os03g32190Os.53053.1.S1_at11/113+18363320..18365634BED zinc finger family protein, expressed
LOC_Os03g32180NANA3+18364965..18366384Leucine Rich Repeat family protein
LOC_Os03g32200NANA3+18378080..18378877hypothetical protein
LOC_Os03g32210NANA3+18381215..18383064hypothetical protein
LOC_Os03g32220Os.55921.1.S1_at11/113+18385327..18386131Zinc finger, C2H2 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53053.1.S1_at--802--9512Chr01:31294280..31294304 (25 bp)
TCTCTGTTCTCGTCTTCTTGTAGAT
NONE
Os.53053.1.S1_at--1070--6931Chr03:18364214..18364238 (25 bp)
GTAGATCTGTCGATCTCTGTCGTCA
LOC_Os03g32190
Os.53053.1.S1_at--765--6951Chr03:18364050..18364074 (25 bp)
GTAGCCACCGTTGAGGAACCGTAGT
LOC_Os03g32190
Os.53053.1.S1_at--985--2611Chr03:18364034..18364058 (25 bp)
AACCGTAGTGCCGTCGATGGATGAT
LOC_Os03g32190
Os.53053.1.S1_at--1081--9251Chr03:18364003..18364027 (25 bp)
TCCTGCAACTTTGAGTTGAGGCTGC
LOC_Os03g32190
Os.53053.1.S1_at--137--3432Chr01:31294716..31294740 (25 bp)
CAGATCTCAGGTATGGAACGACTTT
LOC_Os01g53870
Os.53053.1.S1_at--898--832Chr01:31294728..31294752 (25 bp)
ATGGAACGACTTTGAAGAGCTCTAT
LOC_Os01g53870
Os.53053.1.S1_at--1112--1351Chr03:18363770..18363794 (25 bp)
AGAGCTCTATGAATCCCGAAATGGC
LOC_Os03g32190
Os.53053.1.S1_at--472--2291Chr03:18363752..18363776 (25 bp)
AAATGGCAGTCAGGTTCGTGTTCGT
LOC_Os03g32190
Os.53053.1.S1_at--554--1011Chr03:18363741..18363765 (25 bp)
AGGTTCGTGTTCGTGCTAAATGCAA
LOC_Os03g32190
Os.53053.1.S1_at--314--9831Chr03:18363707..18363731 (25 bp)
TAAAATCTTGTTTGCTTGTTCATCT
LOC_Os03g32190
Target Sequence 
TCTCTGTTCTCGTCTTCTTGTAGATCTGTCGATCTCTGTCGTCAACGGCAACTCCGGTGCTCCGGACGCGCAGGTCGCTG
AGCGGTGAGCGCCAGCGGTAGCCACCGTTGAGGAACCGTAGTGCCGTCGATGGATGATCCATCCTCCTGCAACTTTGAGT
TGAGGCTGCTGGGAATGCGGGGTGATGACGAAGATGACTTGGAGGAGGAACGCGTGGAGGTCTTCGGCAACACTGCCTCG
CCTCGGATCGATGGGTCGCAGCCGGAGACAGAGACGGAGCCGGACGATGACGGTACCGGTGCCGGTGGCAACGGCGCGCC
GTCCGGCTTAAGTGCTAGCAACAAACGGTCCAGATCTCAGGTATGGAACGACTTTGAAGAGCTCTATGAATCCCGAAATG
GCAGTCAGGTTCGTGTTCGTGCTAAATGCAATTACTGCCATAAAATCTTGTTTGCTTGTTCATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53053.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis