Browse Element(s) Details

Os.55921.1.S1_at

Description

gb:AK108997.1
DB_XREF= gi:32994206
TID=Os.55921.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55921 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-153-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-153-G07, full insert sequence.
FL= gb:AK108997.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g32220	11/11	Zinc finger, C2H2 type family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g32170	Os.11440.1.S1_at	8/11	3	+	18360183..18361745	progesterone 5-beta-reductase, putative, expressed
LOC_Os03g32190	Os.53053.1.S1_at	11/11	3	+	18363320..18365634	BED zinc finger family protein, expressed
LOC_Os03g32180	NA	NA	3	+	18364965..18366384	Leucine Rich Repeat family protein
LOC_Os03g32200	NA	NA	3	+	18378080..18378877	hypothetical protein
LOC_Os03g32210	NA	NA	3	+	18381215..18383064	hypothetical protein
LOC_Os03g32220	Os.55921.1.S1_at	11/11	3	+	18385327..18386131	Zinc finger, C2H2 type family protein, expressed
LOC_Os03g32230	Os.50970.1.S1_at	11/11	3	+	18390892..18391988	Zinc finger, C2H2 type family protein, expressed
LOC_Os03g32240	OsAffx.25336.1.S1_at	11/11	3	+	18395746..18397416	hypothetical protein
LOC_Os03g32250	OsAffx.3387.1.S1_at	11/11	3	+	18399271..18400005	expressed protein
LOC_Os03g32260	OsAffx.13154.1.S1_x_at	11/11	3	+	18401290..18401888	hypothetical protein
LOC_Os03g32260	OsAffx.13154.1.S1_at	10/11	3	+	18401290..18401888	hypothetical protein
LOC_Os03g32260	OsAffx.21755.1.S1_x_at	1/11	3	+	18401290..18401888	hypothetical protein
LOC_Os03g32270	Os.53091.1.S1_at	11/11	3	+	18405946..18411214	hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g32270	Os.12141.1.S1_at	11/11	3	+	18405946..18411214	hydrolase, alpha/beta fold family protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0009409	biological_process	response to cold
GO:0009414	biological_process	response to water deprivation
GO:0009611	biological_process	response to wounding
GO:0009651	biological_process	response to salt stress
GO:0009737	biological_process	response to abscisic acid stimulus
GO:0009793	biological_process	embryonic development (sensu Magnoliophyta)
GO:0010200	biological_process	response to chitin
GO:0042538	biological_process	hyperosmotic salinity response
GO:0045449	biological_process	regulation of transcription
GO:0005634	cellular_component	nucleus
GO:0003676	molecular_function	nucleic acid binding
GO:0003677	molecular_function	DNA binding
GO:0003700	molecular_function	transcription factor activity
GO:0008270	molecular_function	zinc ion binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.55921.1.S1_at--201--261	1	Chr03:18385866..18385890 (25 bp)	AACGCGAGCTTCTTCGGTTCCGGTG	LOC_Os03g32220
Os.55921.1.S1_at--973--667	1	Chr03:18385760..18385784 (25 bp)	GTTGCCCATGCACGTAATCGACGCG	LOC_Os03g32220
Os.55921.1.S1_at--349--501	1	Chr03:18385671..18385695 (25 bp)	GCAGGCACAGGTGCTCGGTTTGCCA	LOC_Os03g32220
Os.55921.1.S1_at--677--221	1	Chr03:18385611..18385635 (25 bp)	ACAAGAGGTGCCATTACTGGGACGG	LOC_Os03g32220
Os.55921.1.S1_at--857--943	1	Chr03:18385573..18385597 (25 bp)	TCGGTCACGGCTTCGGCGTCAGGTT	LOC_Os03g32220
Os.55921.1.S1_at--275--1019	1	Chr03:18385525..18385549 (25 bp)	TTTGACCTCAACCTGAAACCGGTGC	LOC_Os03g32220
Os.55921.1.S1_at--1016--903	1	Chr03:18385452..18385476 (25 bp)	TGCAGAGCCCTTTGCCGTTCAAGAA	LOC_Os03g32220
Os.55921.1.S1_at--249--709	1	Chr03:18385418..18385442 (25 bp)	GTCAAGCCCATCATTGGAGCTTAAT	LOC_Os03g32220
Os.55921.1.S1_at--476--119	1	Chr03:18385389..18385413 (25 bp)	AGTAGCATCTTAATTCATCCTAATT	LOC_Os03g32220
Os.55921.1.S1_at--531--959	1	Chr03:18385375..18385399 (25 bp)	TCATCCTAATTCCTTACTGTCCAGA	LOC_Os03g32220
Os.55921.1.S1_at--167--727	1	Chr03:18385357..18385381 (25 bp)	GTCCAGAAATTCATTCGTTTACTTT	LOC_Os03g32220

Target Sequence

AACGCGAGCTTCTTCGGTTCCGGTGCTCCGTCTGCGGCAAGGCCTTCCCGTCGCACCAAGCGCTCGGCGGGCACAAGGCC
AGCCACCGCAAGCCGCCGACGGCCGCGTTGCCCATGCACGTAATCGACGCGCCGCCGCCGCCGTCGGCCGAGGACACAGC
CTCGTCGTCGACGACGACAACAACGTCGGGCGGCGGCAGGCACAGGTGCTCGGTTTGCCACCGTACCTTCGCGACGGGGC
AGGCGCTCGGAGGGCACAAGAGGTGCCATTACTGGGACGGGCTGTCGGTGGTGTCGGTCACGGCTTCGGCGTCAGGTTCC
GGGTCGTCGAGCGTGAGGAACTTTGACCTCAACCTGAAACCGGTGCCGGAGACGGTGGCCGCTGGCGTCAGAAGGTGGGG
AGAGGAGGAGGAGGTGCAGAGCCCTTTGCCGTTCAAGAAGCGCCGGCTGTCAAGCCCATCATTGGAGCTTAATTTATAGT
AGCATCTTAATTCATCCTAATTCCTTACTGTCCAGAAATTCATTCGTTTACTTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis