Browse Element(s) Details


OsAffx.3387.1.S1_at

Description tigr:9631.m03155
TID=OsAffx.3387.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3225011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g32200NANA3+18378080..18378877hypothetical protein
LOC_Os03g32210NANA3+18381215..18383064hypothetical protein
LOC_Os03g32220Os.55921.1.S1_at11/113+18385327..18386131Zinc finger, C2H2 type family protein, expressed
LOC_Os03g32230Os.50970.1.S1_at11/113+18390892..18391988Zinc finger, C2H2 type family protein, expressed
LOC_Os03g32240OsAffx.25336.1.S1_at11/113+18395746..18397416hypothetical protein
LOC_Os03g32250OsAffx.3387.1.S1_at11/113+18399271..18400005expressed protein
LOC_Os03g32260OsAffx.13154.1.S1_x_at11/113+18401290..18401888hypothetical protein
LOC_Os03g32260OsAffx.13154.1.S1_at10/113+18401290..18401888hypothetical protein
LOC_Os03g32260OsAffx.21755.1.S1_x_at1/113+18401290..18401888hypothetical protein
LOC_Os03g32270Os.53091.1.S1_at11/113+18405946..18411214hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g32270Os.12141.1.S1_at11/113+18405946..18411214hydrolase, alpha/beta fold family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3387.1.S1_at--746--3811Chr03:18399303..18399327 (25 bp)
CTCCATGGCCGGTTCTGGAAGCAGA
LOC_Os03g32250
OsAffx.3387.1.S1_at--362--5931Chr03:18399345..18399369 (25 bp)
GAGCATCAAGGCAGCAAGGAGGCAA
LOC_Os03g32250
OsAffx.3387.1.S1_at--1117--2411Chr03:18399408..18399432 (25 bp)
AAAAGACATCGGTGTCGACCATGTT
LOC_Os03g32250
OsAffx.3387.1.S1_at--745--8712Chr08:10606438..10606922 (25 bp)
TGTCGACCATGTTTCCGGCGAGGAA
NONE
OsAffx.3387.1.S1_at--183--171Chr03:18399428..18399452 (25 bp)
ATGTTTCCGGCGAGGAACTCCGTGC
LOC_Os03g32250
OsAffx.3387.1.S1_at--289--951Chr03:18399440..18399464 (25 bp)
AGGAACTCCGTGCTTCACGGGACAA
LOC_Os03g32250
OsAffx.3387.1.S1_at--136--7331Chr03:18399449..18399473 (25 bp)
GTGCTTCACGGGACAATCCAGACAA
LOC_Os03g32250
OsAffx.3387.1.S1_at--57--7631Chr03:18399458..18399482 (25 bp)
GGGACAATCCAGACAACTGCGACAA
LOC_Os03g32250
OsAffx.3387.1.S1_at--224--1651Chr03:18399503..18399749 (25 bp)
AGCGCAGAGACGATCGCTGCCACCT
LOC_Os03g32250
OsAffx.3387.1.S1_at--755--7251Chr03:18399776..18399800 (25 bp)
GTCCTGACGCGCTGCTGACCAGCGG
LOC_Os03g32250
OsAffx.3387.1.S1_at--150--1291Chr03:18399897..18399921 (25 bp)
AGATCTGCCGCTACCTAGCTTGGAG
LOC_Os03g32250
Target Sequence 
CTCCATGGCCGGTTCTGGAAGCAGATGGCTAGAAAAAGGGAGGAGCATCAAGGCAGCAAGGAGGCAAGGCCGGCCTGGAG
AGGAACTAAGAACTGAAGACAGGGCAAAAGACATCGGTGTCGACCATGTTTCCGGCGAGGAACTCCGTGCTTCACGGGAC
AATCCAGACAACTGCGACAACCACCTCCAACTTCACCACCAGCGCAGAGACGATCGCTGCCACCTCGCGCCGCAACAGCC
ACTACCGCCTCGTCCTGACGCGCTGCTGACCAGCGGAGCCGGCTGCAGCCGCAACCCACGCGATCGCGCCGCTTCCGCAT
CGTGCCGCTCCACGTCACCGCCGTCGGTGCCAGATCTGGCGACGGCGGTGCCAGATCTGCCGCTACCTAGCTTGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3387.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis