Browse Element(s) Details


Os.50970.1.S1_at

Description gb:AY295345.1
DB_XREF= gi:31580710
TID=Os.50970.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50970 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) C2H2-type zinc finger protein ZFP36 mRNA, complete cds.
PROD=C2H2-type zinc finger protein ZFP36
FL= gb:AY295345.1 gb:AK059839.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3223011/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g32180NANA3+18364965..18366384Leucine Rich Repeat family protein
LOC_Os03g32200NANA3+18378080..18378877hypothetical protein
LOC_Os03g32210NANA3+18381215..18383064hypothetical protein
LOC_Os03g32220Os.55921.1.S1_at11/113+18385327..18386131Zinc finger, C2H2 type family protein, expressed
LOC_Os03g32230Os.50970.1.S1_at11/113+18390892..18391988Zinc finger, C2H2 type family protein, expressed
LOC_Os03g32240OsAffx.25336.1.S1_at11/113+18395746..18397416hypothetical protein
LOC_Os03g32250OsAffx.3387.1.S1_at11/113+18399271..18400005expressed protein
LOC_Os03g32260OsAffx.13154.1.S1_x_at11/113+18401290..18401888hypothetical protein
LOC_Os03g32260OsAffx.13154.1.S1_at10/113+18401290..18401888hypothetical protein
LOC_Os03g32260OsAffx.21755.1.S1_x_at1/113+18401290..18401888hypothetical protein
LOC_Os03g32270Os.53091.1.S1_at11/113+18405946..18411214hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g32270Os.12141.1.S1_at11/113+18405946..18411214hydrolase, alpha/beta fold family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009409biological_processresponse to cold
GO:0009414biological_processresponse to water deprivation
GO:0009611biological_processresponse to wounding
GO:0009651biological_processresponse to salt stress
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0010200biological_processresponse to chitin
GO:0042538biological_processhyperosmotic salinity response
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003676molecular_functionnucleic acid binding
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50970.1.S1_at--1151--4091Chr03:18391611..18391635 (25 bp)
CGCTTCCGGTGCACCGTCTGCGGGA
LOC_Os03g32230
Os.50970.1.S1_at--275--1791Chr03:18391599..18391623 (25 bp)
ACCGTCTGCGGGAAGGCCTTCGCCT
LOC_Os03g32230
Os.50970.1.S1_at--754--5291Chr03:18391588..18391612 (25 bp)
GAAGGCCTTCGCCTCGTACCAGGCG
LOC_Os03g32230
Os.50970.1.S1_at--14--1631Chr03:18391487..18391511 (25 bp)
AGCTGGCATCCGCTGGTGACTCGAA
LOC_Os03g32230
Os.50970.1.S1_at--517--9291Chr03:18391479..18391503 (25 bp)
TCCGCTGGTGACTCGAAGGAGGACT
LOC_Os03g32230
Os.50970.1.S1_at--2--1791Chr03:18391421..18391445 (25 bp)
ACCGGTGCACCATCTGCAGGAGGAG
LOC_Os03g32230
Os.50970.1.S1_at--16--4411Chr03:18391358..18391382 (25 bp)
GCCACTACTGGGACGGCACGTCGGT
LOC_Os03g32230
Os.50970.1.S1_at--673--1131Chr03:18391200..18391224 (25 bp)
AGTCCACTGCCGGTCAAGAAGCTCA
LOC_Os03g32230
Os.50970.1.S1_at--239--2731Chr03:18391185..18391209 (25 bp)
AAGAAGCTCAGGATGTCCAACTAAT
LOC_Os03g32230
Os.50970.1.S1_at--556--7271Chr03:18391171..18391195 (25 bp)
GTCCAACTAATTCATCATACGCCAT
LOC_Os03g32230
Os.50970.1.S1_at--1001--2011Chr03:18391166..18391190 (25 bp)
ACTAATTCATCATACGCCATCTTGT
LOC_Os03g32230
Target Sequence 
CGCTTCCGGTGCACCGTCTGCGGGAAGGCCTTCGCCTCGTACCAGGCGCTCGGCGGACACAAGTCCAGCCACCGGAAGCC
GCCTTCCCCGGGAGACCACTACGGCGCCGCCGCCGCGGCGCANCAGCTGGCATCCGCTGGTGACTCGAAGGAGGACTCGG
CGTCGTCAGCGGCCGGGAGCACTGGNCCGCACCGGTGCACCATCTGCAGGAGGAGCTTCGCGACGGGGCAGGCGCTCGGC
GGCCACAAGCGCTGCCACTACTGGGACGGCACGTCGGTGTCCGTCTCCGTCTCGGCGTCCGCGTCGGCCGCCTCGTCGGC
CGTCAGGAACTTCGACCTCAACCTGATGCCGCTGCCGGAGAGCACAGCCGCCGCCGGNATCAAGAGGTGGGCGGAGGAGG
AGGAGGTGCAGAGTCCACTGCCGGTCAAGAAGCTCAGGATGTCCAACTAATTCATCATACGCCATCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50970.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis