Browse Element(s) Details


Os.18942.3.A1_a_at

Description gb:CB663587
DB_XREF= gi:29667312
DB_XREF=OSJNEd08L18.r
CLONE=OSJNEd08L18
TID=Os.18942.3
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.18942 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_565441.1 (A.thaliana) putative calmodulin-binding protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3216011/11calmodulin-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g32119OsAffx.22708.5.S1_x_at1/113+18334600..18341422retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g32119OsAffx.22708.2.S1_x_at1/113+18334600..18341422retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g32140NANA3+18342264..18343372hypothetical protein
LOC_Os03g32150Os.6224.2.S1_at8/113+18345237..18347140expressed protein
LOC_Os03g32150Os.6224.1.S1_at1/113+18345237..18347140expressed protein
LOC_Os03g32160Os.18942.2.S1_at11/113+18351938..18356498calmodulin-binding protein, putative, expressed
LOC_Os03g32160Os.18942.3.A1_a_at11/113+18351938..18356498calmodulin-binding protein, putative, expressed
LOC_Os03g32170Os.11440.1.S1_at8/113+18360183..18361745progesterone 5-beta-reductase, putative, expressed
LOC_Os03g32190Os.53053.1.S1_at11/113+18363320..18365634BED zinc finger family protein, expressed
LOC_Os03g32180NANA3+18364965..18366384Leucine Rich Repeat family protein
LOC_Os03g32200NANA3+18378080..18378877hypothetical protein
LOC_Os03g32210NANA3+18381215..18383064hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18942.3.A1_a_at--915--5371Chr03:18355691..18355715 (25 bp)
GAAGAATGTCTTCACCTGTGACAAT
LOC_Os03g32160
Os.18942.3.A1_a_at--374--4771Chr03:18355742..18355766 (25 bp)
GCTCCTTGATGTGAGAACTACGTCA
LOC_Os03g32160
Os.18942.3.A1_a_at--187--5691Chr03:18355779..18355803 (25 bp)
GACTATGACCAGTTTCCTACACAAG
LOC_Os03g32160
Os.18942.3.A1_a_at--755--3711Chr03:18355795..18355819 (25 bp)
CTACACAAGTTTCTACCGATGGTTT
LOC_Os03g32160
Os.18942.3.A1_a_at--936--5671Chr03:18355851..18355875 (25 bp)
GACATTTTCTCAATTGATCCCTCGA
LOC_Os03g32160
Os.18942.3.A1_a_at--1033--9371Chr03:18355872..18355896 (25 bp)
TCGAGTGCATTGGATCCTTGTCCAT
LOC_Os03g32160
Os.18942.3.A1_a_at--609--10431Chr03:18356009..18356033 (25 bp)
TTATGAGGATTGCACCAGTCACCCC
LOC_Os03g32160
Os.18942.3.A1_a_at--316--1171Chr03:18356025..18356049 (25 bp)
AGTCACCCCTCATTCAGTGAAGATT
LOC_Os03g32160
Os.18942.3.A1_a_at--603--6892Chr03:18356073..18356097 (25 bp)
GTATCCTTTGACACACAAGACCTTG
LOC_Os03g32160
Os.18942.3.A1_a_at--160--2211Chr03:18356087..18356111 (25 bp)
ACAAGACCTTGGAGCTGCATTGAAA
LOC_Os03g32160
Os.18942.3.A1_a_at--40--6791Chr03:18356239..18356263 (25 bp)
GTTTTCGTTCACATGTTTATTCCTG
LOC_Os03g32160
Target Sequence 
GAAGAATGTCTTCACCTGTGACAATGAAACACTTCTGGCAAATCCTTCACAGCTCCTTGATGTGAGAACTACGTCATTGC
ATGAAAATGACTATGACCAGTTTCCTACACAAGTTTCTACCGATGGTTTTGGTTTGAGCCAGTCAAGCATACCATCACCT
GACATTTTCTCAATTGATCCCTCGAGTGCATTGGATCCTTGTCCATTGGAAACTGCAGAAAACAATGAAAATCAATATCA
GTATCACAGACAGTGGACAAGTTCTCAAATTCTTTGGTTTATGAGGATTGCACCAGTCACCCCTCATTCAGTGAAGATTA
CTATCGTTGTTCAGATCCATCTGTATCCTTTGACACACAAGACCTTGGAGCTGCATTGAAAGGCTTCATTGCAACGATAT
TTAAGCCCAAGGCGTATAGAGGATGGAGGACATTGTCTTATGTTATAGGATGGATATTCTACACCAAGAAGATTGTTGCT
ATGAAAAGAAATGAACATGGGAAATAACGTTTTCGTTCACATGTTTATTCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18942.3.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis