Browse Element(s) Details


Os.6224.2.S1_at

Description gb:AK107787.1
DB_XREF= gi:32992996
TID=Os.6224.2
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6224 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBb0081B07.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-133-D01, full insert sequence.
FL= gb:AK107787.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g321508/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g32100NANA3+18322058..18323280Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os03g32119OsAffx.22708.5.S1_x_at1/113+18334600..18341422retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g32119OsAffx.22708.2.S1_x_at1/113+18334600..18341422retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g32140NANA3+18342264..18343372hypothetical protein
LOC_Os03g32150Os.6224.2.S1_at8/113+18345237..18347140expressed protein
LOC_Os03g32150Os.6224.1.S1_at1/113+18345237..18347140expressed protein
LOC_Os03g32160Os.18942.2.S1_at11/113+18351938..18356498calmodulin-binding protein, putative, expressed
LOC_Os03g32160Os.18942.3.A1_a_at11/113+18351938..18356498calmodulin-binding protein, putative, expressed
LOC_Os03g32170Os.11440.1.S1_at8/113+18360183..18361745progesterone 5-beta-reductase, putative, expressed
LOC_Os03g32190Os.53053.1.S1_at11/113+18363320..18365634BED zinc finger family protein, expressed
LOC_Os03g32180NANA3+18364965..18366384Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6224.2.S1_at--65--3991Chr03:18345465..18345489 (25 bp)
CGGTGGAACCAATTTGCTTGATCGG
LOC_Os03g32150
Os.6224.2.S1_at--321--4931Chr03:18345450..18345474 (25 bp)
GCTTGATCGGTAGAGCAGACTCGAG
LOC_Os03g32150
Os.6224.2.S1_at--669--1391Chr03:18345434..18345458 (25 bp)
AGACTCGAGATTTGATTGCTGGAAG
LOC_Os03g32150
Os.6224.2.S1_at--591--6331Chr03:18345385..18345409 (25 bp)
GATGCTAAATCTTGCTGTAGAATGC
LOC_Os03g32150
Os.6224.2.S1_at--68--3591Chr03:18345361..18345385 (25 bp)
CATTTCTGATGCTGTGGTGGCCTGT
LOC_Os03g32150
Os.6224.2.S1_at--585--5451Chr03:18345311..18345335 (25 bp)
GAACGCTGCGTGATTTGCTTGAGTT
LOC_Os03g32150
Os.6224.2.S1_at--15--9771Chr03:18345267..18345291 (25 bp)
TAATCGTGGGAACGTTGCCTTTCCT
LOC_Os03g32150
Os.6224.2.S1_at--1112--10671Chr03:18345253..18345277 (25 bp)
TTGCCTTTCCTATTTCCAATAGCCA
LOC_Os03g32150
Os.6224.2.S1_at--660--151Chr03:18344779..18344803 (25 bp)
ATTATCCTCTCTTGACCTAGAAGTC
NONE
Os.6224.2.S1_at--101--1471Chr03:18344761..18344785 (25 bp)
AGAAGTCCTTTGCTTTGTCATGTGC
NONE
Os.6224.2.S1_at--802--8731Chr03:18344746..18344770 (25 bp)
TGTCATGTGCTTATCCAAGAAGGGA
NONE
Target Sequence 
CGGTGGAACCAATTTGCTTGATCGGTAGAGCAGACTCGAGATTTGATTGCTGGAAGAAAGGTATTGTCAAACTTAAGGAA
GATGCTAAATCTTGCTGTAGAATGCATTTCTGATGCTGTGGTGGCCTGTTTCCCCNAGGAAGGTGTGGTTCATGGAACGC
TGCGTGATTTGCTTGAGTTGTGGAAGATAAGAGTTTAGTAATCGTGGGAACGTTGCCTTTCCTATTTCCAATAGCCAATT
NTNNNTATNNNNNATTATCCTCTCTTGACCTAGAAGTCCTTTGCTTTGTCATGTGCTTATCCAAGAAGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6224.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis