Browse Element(s) Details


OsAffx.22275.1.S1_at

Description gb:NM_187628.1
DB_XREF= gi:34902341
TID=OsAffx.22275.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) Hypothetical protein (OSJNBa0009C08.4), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0146011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01400NANA3+267139..268305retrotransposon protein, putative, unclassified
LOC_Os03g01410NANA3+272015..273263Leucine Rich Repeat family protein
LOC_Os03g01420Os.18484.1.S1_at5/113+274095..276245expressed protein
LOC_Os03g01430OsAffx.24934.1.S1_at11/113+280283..281740hypothetical protein
LOC_Os03g01450OsAffx.24935.1.S1_at7/113+287418..288747hypothetical protein
LOC_Os03g01460OsAffx.22275.1.S1_at11/113+290232..291020hypothetical protein
LOC_Os03g01470Os.43909.1.S1_at11/113+292151..293666expressed protein
LOC_Os03g01480OsAffx.24934.1.S1_at11/113+294441..295900hypothetical protein
LOC_Os03g01490Os.34626.1.S1_a_at10/113+300759..301988expressed protein
LOC_Os03g01500OsAffx.10059.1.S1_at11/113+303205..304327hypothetical protein
LOC_Os03g01520OsAffx.22274.1.S1_at9/113+313838..317056hypothetical protein
LOC_Os03g01520OsAffx.22274.2.S1_at1/113+313838..317056hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22275.1.S1_at--96--5752Chr03:290488..290512 (25 bp)
GACGGACCACCATAGCGCCGGAGCT
LOC_Os03g01460
OsAffx.22275.1.S1_at--54--9611Chr03:290516..290540 (25 bp)
TCATCCTCGCGACGGACCAGCGTTG
LOC_Os03g01460
OsAffx.22275.1.S1_at--438--8131Chr03:290703..290727 (25 bp)
GGACTAGCACCGACGGACCACTGCA
LOC_Os03g01460
OsAffx.22275.1.S1_at--1098--1771Chr03:290741..290765 (25 bp)
ACCGCGGTCCCATGTTCCGCTAATT
LOC_Os03g01460
OsAffx.22275.1.S1_at--508--731Chr03:290752..290776 (25 bp)
ATGTTCCGCTAATTCCCATCTCGGG
LOC_Os03g01460
OsAffx.22275.1.S1_at--271--7671Chr03:290776..290800 (25 bp)
GGGTTTTCGTGTTCGCCTCGCCTTG
LOC_Os03g01460
OsAffx.22275.1.S1_at--470--9311Chr03:290836..290860 (25 bp)
TCCCCGATCGAATTCTGCCGATGCG
LOC_Os03g01460
OsAffx.22275.1.S1_at--800--4511Chr03:290860..290884 (25 bp)
GCCCCTGGCTTTCAAGATCTAAGTG
LOC_Os03g01460
OsAffx.22275.1.S1_at--335--2811Chr03:290873..290897 (25 bp)
AAGATCTAAGTGCATGCGCGCCCTC
LOC_Os03g01460
OsAffx.22275.1.S1_at--837--5791Chr03:290937..290961 (25 bp)
GACGCGATCGGCTCCGAGGTATGTT
LOC_Os03g01460
OsAffx.22275.1.S1_at--144--1031Chr03:290953..290977 (25 bp)
AGGTATGTTGCCCATGCGCGCGCTT
LOC_Os03g01460
Target Sequence 
GACGGACCACCATAGCGCCGGAGCTCCCTCATCCTCGCGACGGACCAGCGTTGCCGCTGCTGCGCCTCCACCGCCGGACC
ATCGCGCACCACCGCATCCCCCTTCCGCCGGAGCGGAGCCACGCACGGGACTACCCCCGACAACGCCGCGGTTGTTCCCC
CTACTGCCGGAGCCGCTGCGGCGCTCGACTAGCGACGCCGGACCAGCGCACCGCCGGACTAGCACCGACGGACCACTGCA
GCGCCAAGCCACCACCGCGGTCCCATGTTCCGCTAATTCCCATCTCGGGGGTTTTCGTGTTCGCCTCGCCTTGCCCTGGC
TCACTTCGGGGCGGAGGTGGCGTCGCTGTCCCCGATCGAATTCTGCCGATGCGCCCCTGGCTTTCAAGATCTAAGTGCAT
GCGCGCCCTCGCCGCATGCCGCCCGGCGCTCCGGCAGTCCGGGTGGCCGGACGCGATCGGCTCCGAGGTATGTTGCCCAT
GCGCGCGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22275.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis