Browse Element(s) Details


OsAffx.22274.2.S1_at

Description tigr:9635.m01842
TID=OsAffx.22274.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1826011/11hypothetical protein
LOC_Os03g015201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g18219NANA7+10802955..10803461NA
LOC_Os07g18230Os.17047.1.A1_at6/117+10803688..10805697Protein kinase domain containing protein, expressed
LOC_Os07g18230Os.9734.1.S1_at1/117+10803688..10805697Protein kinase domain containing protein, expressed
LOC_Os07g18240OsAffx.16322.1.S1_at11/117+10808407..10811496lectin protein kinase, putative, expressed
LOC_Os07g18250Os.52547.1.S1_at11/117+10815655..10823387expressed protein
LOC_Os07g18250Os.52547.2.S1_at10/117+10815655..10823387expressed protein
LOC_Os07g18260OsAffx.22274.2.S1_at11/117+10823919..10825307hypothetical protein
LOC_Os07g18270OsAffx.31892.5.S1_at2/117+10826130..10827903retrotransposon, putative, centromere-specific
LOC_Os07g18270OsAffx.31892.1.S1_x_at2/117+10826130..10827903retrotransposon, putative, centromere-specific
LOC_Os07g18270OsAffx.31892.5.S1_x_at1/117+10826130..10827903retrotransposon, putative, centromere-specific
LOC_Os07g18280Os.47114.1.S1_x_at2/117+10833149..10834562retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18280Os.46314.2.S1_x_at2/117+10833149..10834562retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18290OsAffx.28505.1.S1_at11/117+10835974..10837754transposon protein, putative, unclassified, expressed
LOC_Os07g18300OsAffx.28506.1.S1_at6/117+10840254..10845791expressed protein
LOC_Os07g18300OsAffx.25508.1.S1_at1/117+10840254..10845791expressed protein
LOC_Os07g18300OsAffx.3516.1.S1_x_at1/117+10840254..10845791expressed protein
LOC_Os07g18310NANA7+10849577..10850663retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22274.2.S1_at--360--1351Chr07:10824830..10824854 (25 bp)
AGAGATGGAGCAAGTATCAAGTCAT
LOC_Os07g18260
OsAffx.22274.2.S1_at--46--9651Chr07:10824950..10824974 (25 bp)
TCAGATTGATACAGGTGATGGGTTT
LOC_Os07g18260
OsAffx.22274.2.S1_at--424--2631Chr07:10825036..10825060 (25 bp)
AACCTGCAGTCCCTACTGTTGGTAT
LOC_Os07g18260
OsAffx.22274.2.S1_at--1041--5392Chr07:10825080..10825104 (25 bp)
GAAGCTCAAGATTACTACAATCGTT
LOC_Os07g18260
OsAffx.22274.2.S1_at--303--9851Chr07:10825095..10825119 (25 bp)
TACAATCGTTATGCAAAGAACTGGG
LOC_Os07g18260
OsAffx.22274.2.S1_at--731--10171Chr07:10825169..10825193 (25 bp)
TATAATAGATATGAGTTTGCTTGCT
LOC_Os07g18260
OsAffx.22274.2.S1_at--329--10731Chr07:10825189..10825213 (25 bp)
TTGCTACTTTGAGCGCACAAGCCAG
LOC_Os07g18260
OsAffx.22274.2.S1_at--357--4591Chr07:10825201..10825225 (25 bp)
GCGCACAAGCCAGAAAAAGAATCCA
LOC_Os07g18260
OsAffx.22274.2.S1_at--584--5251Chr07:10825219..10825243 (25 bp)
GAATCCAAAGTCAAGCGCTAGCAGT
LOC_Os07g18260
OsAffx.22274.2.S1_at--1137--9691Chr07:10825229..10825253 (25 bp)
TCAAGCGCTAGCAGTGGGTCAAAAA
LOC_Os07g18260
OsAffx.22274.2.S1_at--400--1091Chr07:10825241..10825265 (25 bp)
AGTGGGTCAAAAAACTGCGAGAGTT
LOC_Os07g18260
Target Sequence 
AGAGATGGAGCAAGTATCAAGTCATGATGATGATGTGTTGAGGGAAGCAAGTCATGATGATGATATGTTGAGGGAAGTAC
TGCTTGAAACTGGGCTGTTTACAGGTGCCATGAGCATTGATCAGATTGATACAGGTGATGGGTTTGAAATACAAGATGAC
TTTGGACGTGAAGATGGAGAGACTAAAGACGAGGGGGTCCAATCTCAACCTGCAGTCCCTACTGTTGGTATGGAGTTCTT
TTCAGAAAAAGAAGCTCAAGATTACTACAATCGTTATGCAAAGAACTGGGGTTTCGGAACAAAGATTTCAAGCAAAAAAA
AAGCAATGTCACCAAGGAGTATAATAGATATGAGTTTGCTTGCTACTTTGAGCGCACAAGCCAGAAAAAGAATCCAAAGT
CAAGCGCTAGCAGTGGGTCAAAAAACTGCGAGAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22274.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis