Browse Element(s) Details


Os.17047.1.A1_at

Description gb:CB623265
DB_XREF= gi:29618253
DB_XREF=OSIIEa10N23.r
CLONE=OSIIEa10N23
TID=Os.17047.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.17047 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T50661 (A.thaliana) T50661 receptor-type protein kinase LRK1 (imported) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g182306/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g18190OsAffx.22722.1.S1_at1/117+10779075..10786151retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18190OsAffx.22722.1.S1_x_at1/117+10779075..10786151retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18200OsAffx.20565.1.S1_at1/117+10787259..10790011retrotransposon protein, putative, unclassified
LOC_Os07g18210Os.47463.1.S1_x_at6/117+10793724..10798721transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g18210Os.14491.2.S1_x_at5/117+10793724..10798721transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g18219NANA7+10802955..10803461NA
LOC_Os07g18230Os.17047.1.A1_at6/117+10803688..10805697Protein kinase domain containing protein, expressed
LOC_Os07g18230Os.9734.1.S1_at1/117+10803688..10805697Protein kinase domain containing protein, expressed
LOC_Os07g18240OsAffx.16322.1.S1_at11/117+10808407..10811496lectin protein kinase, putative, expressed
LOC_Os07g18250Os.52547.1.S1_at11/117+10815655..10823387expressed protein
LOC_Os07g18250Os.52547.2.S1_at10/117+10815655..10823387expressed protein
LOC_Os07g18260OsAffx.22274.2.S1_at11/117+10823919..10825307hypothetical protein
LOC_Os07g18270OsAffx.31892.5.S1_at2/117+10826130..10827903retrotransposon, putative, centromere-specific
LOC_Os07g18270OsAffx.31892.1.S1_x_at2/117+10826130..10827903retrotransposon, putative, centromere-specific
LOC_Os07g18270OsAffx.31892.5.S1_x_at1/117+10826130..10827903retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17047.1.A1_at--409--5711NONE
GACTCCCCGGGAAACCAGCATAGTT
NONE
Os.17047.1.A1_at--1033--2351NONE
AAACCAGCATAGTTTGTTCGATGGG
NONE
Os.17047.1.A1_at--129--6731Chr07:10803981..10804005 (25 bp)
GTTCTTCAGTTTCTGCATAATAGCT
LOC_Os07g18230
Os.17047.1.A1_at--709--9751Chr07:10803953..10803977 (25 bp)
TAATCGAGGCCATGGACAGTAGACT
LOC_Os07g18230
Os.17047.1.A1_at--769--8131Chr07:10803940..10803964 (25 bp)
GGACAGTAGACTCCAAGCTGATTTT
LOC_Os07g18230
Os.17047.1.A1_at--56--5731Chr07:10803932..10803956 (25 bp)
GACTCCAAGCTGATTTTAATATCGA
LOC_Os07g18230
Os.17047.1.A1_at--71--10511Chr07:10803917..10803941 (25 bp)
TTAATATCGATGAGGTTTGTCTTGT
LOC_Os07g18230
Os.17047.1.A1_at--399--5171Chr07:10803852..10803876 (25 bp)
GCAAGACCTAGCATGCAGCAAGTCA
LOC_Os07g18230
Os.17047.1.A1_at--398--6511Chr07:10803665..10803689 (25 bp)
GATATACTAGAAGCTATGCAGAACT
NONE
Os.17047.1.A1_at--430--3511Chr07:10803610..10803634 (25 bp)
CATGTACATTTTTCTCAACCAGAAA
NONE
Os.17047.1.A1_at--457--9671Chr07:10803521..10803545 (25 bp)
TCACGTTTCTTTTTCTAGAACTTCT
NONE
Target Sequence 
GACTCCCCGGGAAACCAGCATAGTTTGTTCGATGGGGTTCTTCAGTTTCTGCATAATAGCTCNCTAATCGAGGCCATGGA
CAGTAGACTCCAAGCTGATTTTAATATCGATGAGGTTTGTCTTGTNCTAAAGCTAGGTCTTCTATGCTCNCNCCCATTTA
NTAATGCAAGACCTAGCATGCAGCAAGTCATGGAGTACCTNGAAGGTGATACNCCNATACCANGAGATTTCATCAAGGCA
NTTTTAGCTTTACTATGCAGGCTTTGATGCAGAGCAAAGGATTTGAATCACCAGNCATGTTATGCCCNCAGTTTNCGAGT
ATTGGCACATTCTNTGAACTGTCAGGGGGAAGATGATATACTAGAAGCTATGCAGAACTAAGAACATCAGAAAATCATAT
TAGGATATACATGTACATTTTTCTCAACCAGAAATCTGTAANCCGGAGAACAGNTTGTAGTGNCATAAAAATAGCAACAA
ATGCTATGTAAAATGTTTTCACGTTTCTTTTTCTAGAACTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17047.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis