Browse Element(s) Details


Os.52547.1.S1_at

Description gb:AK106663.1
DB_XREF= gi:32991872
TID=Os.52547.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52547 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-113-H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-113-H04, full insert sequence.
FL= gb:AK106663.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1825011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g18210Os.47463.1.S1_x_at6/117+10793724..10798721transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g18210Os.14491.2.S1_x_at5/117+10793724..10798721transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g18219NANA7+10802955..10803461NA
LOC_Os07g18230Os.17047.1.A1_at6/117+10803688..10805697Protein kinase domain containing protein, expressed
LOC_Os07g18230Os.9734.1.S1_at1/117+10803688..10805697Protein kinase domain containing protein, expressed
LOC_Os07g18240OsAffx.16322.1.S1_at11/117+10808407..10811496lectin protein kinase, putative, expressed
LOC_Os07g18250Os.52547.1.S1_at11/117+10815655..10823387expressed protein
LOC_Os07g18250Os.52547.2.S1_at10/117+10815655..10823387expressed protein
LOC_Os07g18260OsAffx.22274.2.S1_at11/117+10823919..10825307hypothetical protein
LOC_Os07g18270OsAffx.31892.5.S1_at2/117+10826130..10827903retrotransposon, putative, centromere-specific
LOC_Os07g18270OsAffx.31892.1.S1_x_at2/117+10826130..10827903retrotransposon, putative, centromere-specific
LOC_Os07g18270OsAffx.31892.5.S1_x_at1/117+10826130..10827903retrotransposon, putative, centromere-specific
LOC_Os07g18280Os.47114.1.S1_x_at2/117+10833149..10834562retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18280Os.46314.2.S1_x_at2/117+10833149..10834562retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18290OsAffx.28505.1.S1_at11/117+10835974..10837754transposon protein, putative, unclassified, expressed
LOC_Os07g18300OsAffx.28506.1.S1_at6/117+10840254..10845791expressed protein
LOC_Os07g18300OsAffx.25508.1.S1_at1/117+10840254..10845791expressed protein
LOC_Os07g18300OsAffx.3516.1.S1_x_at1/117+10840254..10845791expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0016020cellular_componentmembrane
GO:0008324molecular_functioncation transporter activity
GO:0015562molecular_functionefflux permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52547.1.S1_at--619--10671Chr07:10816309..10816333 (25 bp)
TTGCACCAAAAACCTTGGGTTCTAT
LOC_Os07g18250
Os.52547.1.S1_at--87--2372Chr03:16898536..16898785 (25 bp)
AAACCTTGGGTTCTATTGAGTGTGA
NONE
Os.52547.1.S1_at--119--6131Chr07:10816283..10816307 (25 bp)
GAGTGTGATATCAACCTACTATGTT
LOC_Os07g18250
Os.52547.1.S1_at--16--3451Chr07:10816238..10816262 (25 bp)
CAGTAACACTAAGATCTCAGCTTCA
LOC_Os07g18250
Os.52547.1.S1_at--1138--6051Chr07:10816206..10816230 (25 bp)
GAGTTGCTTGGTATGCTGTTTGAAA
LOC_Os07g18250
Os.52547.1.S1_at--1083--10431Chr07:10816176..10816200 (25 bp)
TTAGTATCGACTTCCATATGTTGGG
LOC_Os07g18250
Os.52547.1.S1_at--265--4331Chr07:10816163..10816187 (25 bp)
CCATATGTTGGGTTTCAGTCATGGG
LOC_Os07g18250
Os.52547.1.S1_at--495--5971Chr07:10816120..10816144 (25 bp)
GAGAAGCCTTGAATGTTAAACCAGT
LOC_Os07g18250
Os.52547.1.S1_at--432--2371Chr07:10816103..10816127 (25 bp)
AAACCAGTTTGTCTACTCATCTCAT
LOC_Os07g18250
Os.52547.1.S1_at--985--7151Chr07:10816093..10816117 (25 bp)
GTCTACTCATCTCATTAACACTATG
LOC_Os07g18250
Os.52547.1.S1_at--615--9751Chr07:10816064..10816088 (25 bp)
TAATTTGCCCTCTTATTCTGCAGCT
LOC_Os07g18250
Target Sequence 
TTGCACCAAAAACCTTGGGTTCTATTGAGTGTGATATCAACCTACTATGTTTTGAATGAGGTTGTTATATACAGTAACAC
TAAGATCTCAGCTTCAAAAAATAGAGTTGCTTGGTATGCTGTTTGAAATTGAATTAGTATCGACTTCCATATGTTGGGTT
TCAGTCATGGGGTGGAAAAAAGAACAACAGAGAAGCCTTGAATGTTAAACCAGTTTGTCTACTCATCTCATTAACACTAT
GATGCTAATTTGCCCTCTTATTCTGCAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52547.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis