Browse Element(s) Details


OsAffx.16322.1.S1_at

Description tigr:9635.m01839
TID=OsAffx.16322.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1824011/11lectin protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g18190OsAffx.22722.1.S1_at1/117+10779075..10786151retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18190OsAffx.22722.1.S1_x_at1/117+10779075..10786151retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18200OsAffx.20565.1.S1_at1/117+10787259..10790011retrotransposon protein, putative, unclassified
LOC_Os07g18210Os.47463.1.S1_x_at6/117+10793724..10798721transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g18210Os.14491.2.S1_x_at5/117+10793724..10798721transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g18219NANA7+10802955..10803461NA
LOC_Os07g18230Os.17047.1.A1_at6/117+10803688..10805697Protein kinase domain containing protein, expressed
LOC_Os07g18230Os.9734.1.S1_at1/117+10803688..10805697Protein kinase domain containing protein, expressed
LOC_Os07g18240OsAffx.16322.1.S1_at11/117+10808407..10811496lectin protein kinase, putative, expressed
LOC_Os07g18250Os.52547.1.S1_at11/117+10815655..10823387expressed protein
LOC_Os07g18250Os.52547.2.S1_at10/117+10815655..10823387expressed protein
LOC_Os07g18260OsAffx.22274.2.S1_at11/117+10823919..10825307hypothetical protein
LOC_Os07g18270OsAffx.31892.5.S1_at2/117+10826130..10827903retrotransposon, putative, centromere-specific
LOC_Os07g18270OsAffx.31892.1.S1_x_at2/117+10826130..10827903retrotransposon, putative, centromere-specific
LOC_Os07g18270OsAffx.31892.5.S1_x_at1/117+10826130..10827903retrotransposon, putative, centromere-specific
LOC_Os07g18280Os.47114.1.S1_x_at2/117+10833149..10834562retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18280Os.46314.2.S1_x_at2/117+10833149..10834562retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18290OsAffx.28505.1.S1_at11/117+10835974..10837754transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16322.1.S1_at--1063--3491Chr07:10809829..10809853 (25 bp)
CATGTTTGTTCTCGAGGTTGCCTGT
LOC_Os07g18240
OsAffx.16322.1.S1_at--23--7611Chr07:10809804..10809828 (25 bp)
GGGCAGAGACCCATCAATCAAAGTT
LOC_Os07g18240
OsAffx.16322.1.S1_at--452--10431Chr07:10809759..10809783 (25 bp)
TTAGTTGACTGGGTGCTTGAGCAAT
LOC_Os07g18240
OsAffx.16322.1.S1_at--805--10871Chr07:10809650..10809674 (25 bp)
TTGGACTTTTATGCTCTCACCCTTT
LOC_Os07g18240
OsAffx.16322.1.S1_at--860--4811Chr07:10809638..10809662 (25 bp)
GCTCTCACCCTTTTGCTAATGCAAG
LOC_Os07g18240
OsAffx.16322.1.S1_at--285--9771Chr07:10809622..10809646 (25 bp)
TAATGCAAGGCCTTCTATGCGGCAG
LOC_Os07g18240
OsAffx.16322.1.S1_at--190--3691Chr07:10809608..10809632 (25 bp)
CTATGCGGCAGGTCATTCATTACCT
LOC_Os07g18240
OsAffx.16322.1.S1_at--489--6951Chr07:10809578..10809602 (25 bp)
GTAGCATTCCATTACCAGAGATGTC
LOC_Os07g18240
OsAffx.16322.1.S1_at--801--1971Chr07:10809459..10809483 (25 bp)
ACTGCATCTGCCATTTCAAACGGAA
LOC_Os07g18240
OsAffx.16322.1.S1_at--946--9011Chr07:10809403..10809427 (25 bp)
TGCACTGTTCTTTTCTTACTCCTTT
LOC_Os07g18240
OsAffx.16322.1.S1_at--871--2371Chr07:10809373..10809397 (25 bp)
AAACTGCTTTCCTTGTATACAGAAG
LOC_Os07g18240
Target Sequence 
CATGTTTGTTCTCGAGGTTGCCTGTGGGCAGAGACCCATCAATCAAAGTTCACTTGATAGCCAAACGATGTTAGTTGACT
GGGTGCTTGAGCAATGGAACAAAGGATCACTAGTCAGTACAGTGGATAGCAGGCTTGAAGGAAATTATAATGTTAGAGAG
GCAGTTTTAGCTATAAATCTTGGACTTTTATGCTCTCACCCTTTTGCTAATGCAAGGCCTTCTATGCGGCAGGTCATTCA
TTACCTTGATGGTAGCATTCCATTACCAGAGATGTCACCAACAGATTTGAGCTATCATATGATGACAATAATGCAAAATG
AAGGGTTTGACGAGTACATCATGACAAGTTCATCGATGGTAAGCAATGGCACTGCATCTGCCATTTCAAACGGAAGATGA
CATGAATTATGGTCATCAGATATGAATGCACTGTTCTTTTCTTACTCCTTTTGTAAAAACTGCTTTCCTTGTATACAGAA
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16322.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis