Browse Element(s) Details


OsAffx.22336.1.S1_at

Description gb:NM_187227.1
DB_XREF= gi:34901539
GEN=P0473C09.29
TID=OsAffx.22336.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) similar to gag-pol polyprotein (P0473C09.29), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2821011/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28170OsAffx.28640.1.S1_at11/117+16445403..16448876expressed protein
LOC_Os07g28170Os.6809.2.S1_x_at1/117+16445403..16448876expressed protein
LOC_Os07g28180OsAffx.28641.1.S1_at11/117+16452896..16453628hypothetical protein
LOC_Os07g28190NANA7+16457764..16458904retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g28200Os.45173.1.S1_x_at1/117+16462847..16470712retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g28210OsAffx.22336.1.S1_at11/117+16472161..16476734retrotransposon protein, putative, unclassified
LOC_Os07g28220NANA7+16480702..16481550transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g28230NANA7+16484854..16487478transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g28240Os.14491.2.S1_x_at2/117+16490891..16494072transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g28240Os.47463.1.S1_x_at1/117+16490891..16494072transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g28250OsAffx.28642.1.S1_at11/117+16501471..16503020lipase class 3 family protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22336.1.S1_at--246--2871Chr07:16472820..16472844 (25 bp)
AAGTGGTCTCAGTGGCTTTCCCAAG
LOC_Os07g28210
OsAffx.22336.1.S1_at--404--671Chr07:16472744..16472768 (25 bp)
ATGAAGTTCTGTTTGCTCGCAAGCC
LOC_Os07g28210
OsAffx.22336.1.S1_at--30--4551Chr07:16472722..16472746 (25 bp)
GCCCGGTCACTTTGGCATAGCTGAT
LOC_Os07g28210
OsAffx.22336.1.S1_at--184--8231Chr07:16472693..16472717 (25 bp)
GGCAATGTACTGTTCCTGATGTGCA
LOC_Os07g28210
OsAffx.22336.1.S1_at--113--3011Chr07:16472640..16472664 (25 bp)
AATGAGTTGCTCCATCAGCAGCTTA
LOC_Os07g28210
OsAffx.22336.1.S1_at--222--10851Chr07:16472438..16472462 (25 bp)
TTGGTGCTGTTGCTTATCGTCTTAA
LOC_Os07g28210
OsAffx.22336.1.S1_at--84--9631Chr07:16472416..16472440 (25 bp)
TAAGTTCCCTCCTGGCAGTCAAATA
LOC_Os07g28210
OsAffx.22336.1.S1_at--114--7511Chr07:16472385..16472409 (25 bp)
GTGGTACATGTCTCCTTGCTCAAGA
LOC_Os07g28210
OsAffx.22336.1.S1_at--651--7771Chr07:16472293..16472317 (25 bp)
GGTGCAACCTGAAGTGATTCTCCGC
LOC_Os07g28210
OsAffx.22336.1.S1_at--437--6391Chr07:16472246..16472270 (25 bp)
GATCGGCTATTCCTCAAGGTTTGGT
LOC_Os07g28210
OsAffx.22336.1.S1_at--741--8991Chr07:16472203..16472227 (25 bp)
TGAAGAACTTGCTACCTGGGAGAAT
LOC_Os07g28210
Target Sequence 
AAGTGGTCTCAGTGGCTTTCCCAAGCACAATACTGGTATAACACTTCTTTGCATAGCACACTGGGTAAGACCCCCTATGA
AGTTCTGTTTGCTCGCAAGCCCGGTCACTTTGGCATAGCTGATTTGGGGCAATGTACTGTTCCTGATGTGCAAATGTGGT
TGCAAGAACGAGCTGGACTAAATGAGTTGCTCCATCAGCAGCTTACACGAGCGCAACAGCTGGAGCGAGTTGGTGCTGTT
GCTTATCGTCTTAAGTTCCCTCCTGGCAGTCAAATACATCCGGTGGTACATGTCTCCTTGCTCAAGAAAGCCATTCACCC
ACAGGTGCAACCTGAAGTGATTCTCCGCCGTCGCTTGATCAAACGCGGCCGATCGGCTATTCCTCAAGGTTTGGTTCAGT
GGACAAACATGCCTGAAGAACTTGCTACCTGGGAGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22336.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis