Browse Element(s) Details


OsAffx.22369.1.S1_at

Description gb:NM_187087.1
DB_XREF= gi:34901259
TID=OsAffx.22369.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GENSCAN etc. (P0475E07.39), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2667011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26640Os.44151.1.S1_x_at11/117+15367441..15368473Aquaporin PIP2.2, putative, expressed
LOC_Os07g26640Os.31191.2.S1_x_at1/117+15367441..15368473Aquaporin PIP2.2, putative, expressed
LOC_Os07g26650OsAffx.28603.1.S1_at11/117+15374237..15374482hypothetical protein
LOC_Os07g26660Os.31191.2.S1_x_at11/117+15375222..15376595expressed protein
LOC_Os07g26660Os.31191.1.S1_at10/117+15375222..15376595expressed protein
LOC_Os07g26660Os.55453.1.S1_at1/117+15375222..15376595expressed protein
LOC_Os07g26660Os.44151.1.S1_x_at1/117+15375222..15376595expressed protein
LOC_Os07g26670OsAffx.22369.1.S1_at11/117+15384182..15384572hypothetical protein
LOC_Os07g26690Os.11330.1.S1_a_at11/117+15404748..15408054aquaporin PIP2.4, putative, expressed
LOC_Os07g26690Os.11330.1.S1_x_at8/117+15404748..15408054aquaporin PIP2.4, putative, expressed
LOC_Os07g26690Os.11330.2.S1_x_at6/117+15404748..15408054aquaporin PIP2.4, putative, expressed
LOC_Os07g26690Os.31191.2.S1_x_at4/117+15404748..15408054aquaporin PIP2.4, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22369.1.S1_at--455--1151Chr07:15384517..15384541 (25 bp)
AGTCGAACCACAGCATGACGGCGGT
LOC_Os07g26670
OsAffx.22369.1.S1_at--428--1051Chr07:15384475..15384499 (25 bp)
AGGTGATGAGCATCCCGATCAAGGC
LOC_Os07g26670
OsAffx.22369.1.S1_at--203--2771Chr07:15384434..15384458 (25 bp)
AAGACGGAGCTGTCTCAAGGTGCGC
LOC_Os07g26670
OsAffx.22369.1.S1_at--927--2891Chr07:15384418..15384442 (25 bp)
AAGGTGCGCGCCAGGAGTACATCGA
LOC_Os07g26670
OsAffx.22369.1.S1_at--122--991Chr07:15384406..15384430 (25 bp)
AGGAGTACATCGACGCCCTCATGAG
LOC_Os07g26670
OsAffx.22369.1.S1_at--339--5811Chr07:15384395..15384419 (25 bp)
GACGCCCTCATGAGCATTGTGGATT
LOC_Os07g26670
OsAffx.22369.1.S1_at--163--1551Chr07:15384383..15384407 (25 bp)
AGCATTGTGGATTGCATCCTCTTCC
LOC_Os07g26670
OsAffx.22369.1.S1_at--550--4231Chr07:15384325..15384349 (25 bp)
CCGGTTTTGGCGAGACTGTCAGGAT
LOC_Os07g26670
OsAffx.22369.1.S1_at--495--1391Chr07:15384313..15384337 (25 bp)
AGACTGTCAGGATGGCCCAGGCTGA
LOC_Os07g26670
OsAffx.22369.1.S1_at--20--3491Chr07:15384306..15384330 (25 bp)
CAGGATGGCCCAGGCTGAGCAAGCC
LOC_Os07g26670
OsAffx.22369.1.S1_at--73--5172Chr07:15384288..15384312 (25 bp)
GCAAGCCAACGCTACTAGAAAAAGC
LOC_Os07g26670
Target Sequence 
AGTCGAACCACAGCATGACGGCGGTGGGCGAGGGAAAGTGGGAGGTGATGAGCATCCCGATCAAGGCGGAGGATCAGGGG
AGCAAGACGGAGCTGTCTCAAGGTGCGCGCCAGGAGTACATCGACGCCCTCATGAGCATTGTGGATTGCATCCTCTTCCC
AGAGCTCCGTGAGCACATCCGCGCCACCATGGCCGGTTTTGGCGAGACTGTCAGGATGGCCCAGGCTGAGCAAGCCAACG
CTACTAGAAAAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22369.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis