Browse Element(s) Details


OsAffx.22401.1.S1_x_at

Description tigr:9635.m01465
TID=OsAffx.22401.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1476011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g14740Os.40417.1.A1_at11/117+8405063..8406024Harpin-induced protein 1 containing protein, expressed
LOC_Os07g14740OsAffx.22756.1.S1_s_at1/117+8405063..8406024Harpin-induced protein 1 containing protein, expressed
LOC_Os07g14750NANA7+8426615..842694760S acidic ribosomal protein P2, putative
LOC_Os07g14760OsAffx.22401.1.S1_x_at11/117+8428136..8429733hypothetical protein
LOC_Os07g14760OsAffx.29322.1.S1_x_at1/117+8428136..8429733hypothetical protein
LOC_Os07g14770NANA7+8435420..8435623hypothetical protein
LOC_Os07g14780OsAffx.31069.1.S1_x_at1/117+8438838..8439317retrotransposon protein, putative, unclassified
LOC_Os07g14790NANA7+8441692..8444554transposon protein, putative, unclassified
LOC_Os07g14800OsAffx.20387.1.S1_x_at2/117+8445630..8451848retrotransposon protein, putative, unclassified
LOC_Os07g14800OsAffx.10596.1.S1_x_at1/117+8445630..8451848retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22401.1.S1_x_at--880--8511Chr07:8429342..8429366 (25 bp)
TGGACAGTGGGCTGGAGAAGACGCA
LOC_Os07g14760
OsAffx.22401.1.S1_x_at--96--1511Chr07:8429366..8429390 (25 bp)
AGCACCGGCATCTGCCAGCGGTGGA
LOC_Os07g14760
OsAffx.22401.1.S1_x_at--294--3551Chr07:8429374..8429398 (25 bp)
CATCTGCCAGCGGTGGAAGGCACCG
LOC_Os07g14760
OsAffx.22401.1.S1_x_at--135--4772Chr07:8429409..8429433 (25 bp)
GCTGCACGCCGTGGAGGCCGAGCTG
LOC_Os07g14760
OsAffx.22401.1.S1_x_at--651--4571Chr07:8429449..8429473 (25 bp)
GCGCGGGAAATCGAGGCGGTGGCAC
LOC_Os07g14760
OsAffx.22401.1.S1_x_at--321--991Chr07:8429483..8429507 (25 bp)
AGGAGGCAGCCTCGCCGTGTGGCTG
LOC_Os07g14760
OsAffx.22401.1.S1_x_at--126--2491Chr07:8429518..8429542 (25 bp)
AACAGGAACCTCACCATGGCGCGCT
LOC_Os07g14760
OsAffx.22401.1.S1_x_at--671--3251Chr07:8429585..8429609 (25 bp)
CAACGAAGACGACGCAGGTCTGCGC
LOC_Os07g14760
OsAffx.22401.1.S1_x_at--292--8111Chr07:8429628..8429652 (25 bp)
GGACGCATCACCTTCCCCAAAGACG
LOC_Os07g14760
OsAffx.22401.1.S1_x_at--749--4171Chr07:8429643..8429667 (25 bp)
CCCAAAGACGGCCTCGTCGTCGATG
LOC_Os07g14760
OsAffx.22401.1.S1_x_at--367--3792Chr09:3884251..3884274 (24 bp)
CTCGTCGTCGATGATGGTGTCGGCA
NONE
Target Sequence 
TGGACAGTGGGCTGGAGAAGACGCAGCACCGGCATCTGCCAGCGGTGGAAGGCACCGCCGCACGGAGGCTGCACGCCGTG
GAGGCCGAGCTGGGGCGGTCGGCGCCGGCGCGGGAAATCGAGGCGGTGGCACGAGATGAGGAGGAGGCAGCCTCGCCGTG
TGGCTGCGCCGCCACCAACAGGAACCTCACCATGGCGCGCTCCGTCGCCCGCGCGGCCACGCCGTCGGCACCACCGTCGT
CGCCAACGAAGACGACGCAGGTCTGCGCACCCGCCGTGGCCTCGTCGGACGCATCACCTTCCCCAAAGACGGCCTCGTCG
TCGATGATGGTGTCGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22401.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis