Browse Element(s) Details


OsAffx.22433.2.S1_at

Description tigr:9638.m02967
TID=OsAffx.22433.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3383010/11MATH domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33810Os.3387.1.S1_at11/1110+17594205..17596895Myb-related protein Myb4, putative, expressed
LOC_Os10g33820Os.48029.1.S1_at10/1110+17609769..17611142expressed protein
LOC_Os10g33830OsAffx.22433.2.S1_at10/1110+17615891..17627535MATH domain containing protein
LOC_Os10g33840Os.8626.1.S1_a_at11/1110+17631084..17635089expressed protein
LOC_Os10g33840Os.8626.3.S1_s_at11/1110+17631084..17635089expressed protein
LOC_Os10g33840Os.8626.1.S1_x_at11/1110+17631084..17635089expressed protein
LOC_Os10g33840Os.8626.3.S1_x_at10/1110+17631084..17635089expressed protein
LOC_Os10g33850OsAffx.29627.1.S1_at11/1110+17636496..17638453hypothetical protein
LOC_Os10g33862NANA10+17644205..17645488expressed protein
LOC_Os10g33874Os.46665.1.S1_at11/1110+17650903..17656065expressed protein
LOC_Os10g33874Os.46664.1.A1_at9/1110+17650903..17656065expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22433.2.S1_at--711--10091Chr10:17622521..17622545 (25 bp)
TATGGCTTCTCAGCGCTACTTCAGA
LOC_Os10g33830
OsAffx.22433.2.S1_at--460--2851Chr10:17622479..17622503 (25 bp)
AAGTCTGCTGCATTTCATTGCTCTG
LOC_Os10g33830
OsAffx.22433.2.S1_at--463--71NONE
ATTGCTCTGGATACAACTGGTACTT
NONE
OsAffx.22433.2.S1_at--889--7451Chr10:17622101..17622125 (25 bp)
GTGTCTCCAATGCATAAAACCCTTG
LOC_Os10g33830
OsAffx.22433.2.S1_at--1057--8871Chr10:17622075..17622099 (25 bp)
TGATGGAACTCCACATGTTGCTCTT
LOC_Os10g33830
OsAffx.22433.2.S1_at--844--8691Chr10:17622045..17622069 (25 bp)
TGTGCTGTCCCGACTAAGCTTTAAG
LOC_Os10g33830
OsAffx.22433.2.S1_at--945--6711Chr10:17621997..17622021 (25 bp)
GTTCGTGCTGTCAATGTACAACCAT
LOC_Os10g33830
OsAffx.22433.2.S1_at--679--2331Chr10:17621473..17621495 (23 bp)
AAAGAGGTTCTCTTCCTCCAGAAGA
LOC_Os10g33830
OsAffx.22433.2.S1_at--513--8791Chr10:17621435..17621459 (25 bp)
TGTTCAGAATCTCTTCCTCCAGAAG
LOC_Os10g33830
OsAffx.22433.2.S1_at--625--6611Chr10:17621360..17621384 (25 bp)
GTTGGATTTGAAGCCATCGGTCCTT
LOC_Os10g33830
OsAffx.22433.2.S1_at--875--491Chr10:17621345..17621369 (25 bp)
ATCGGTCCTTTCACCTGCATTTGAA
LOC_Os10g33830
Target Sequence 
TATGGCTTCTCAGCGCTACTTCAGAGGGGAGCTTTAGCAGCCAAGTCTGCTGCATTTCATTGCTCTGGATACAACTGGTA
CTTGAAAGTGTCTCCAATGCATAAAACCCTTGGTGATGGAACTCCACATGTTGCTCTTTCTCTTGTGCTGTCCCGACTAA
GCTTTAAGCCAGATTACACCATGAATGCAGTGTTCGTGCTGTCAATGTACAACCATTCGAAGGGAAATTTTCTTGTAGTC
AAAGAGGTTCTCTTCCTCCAGAAGAAGAAGTTTGTCTCTGTTCAGAATCTCTTCCTCCAGAAGAAGGATTTCACTAAAGG
GGATTACACCTGGACCATGAACAACTTCCCTGAGTTGGATTTGAAGCCATCGGTCCTTTCACCTGCATTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22433.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis