Browse Element(s) Details


OsAffx.22461.4.S1_at

Description tigr:9630.m05035
TID=OsAffx.22461.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5126011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51240NANA2+31372122..31376793retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g51250NANA2+31377010..31378357retrotransposon protein, putative, unclassified
LOC_Os02g51260OsAffx.22461.4.S1_at11/112+31379642..31382690hypothetical protein
LOC_Os02g51260OsAffx.22461.3.S1_x_at8/112+31379642..31382690hypothetical protein
LOC_Os02g51260OsAffx.22461.2.S1_x_at6/112+31379642..31382690hypothetical protein
LOC_Os02g51270OsAffx.3035.1.S1_at11/112+31384253..31384768hypothetical protein
LOC_Os02g51280Os.47948.1.S1_at10/112+31390903..31393176TCP family transcription factor containing protein, expressed
LOC_Os02g51290Os.16193.1.S1_at11/112+31401276..31403716HVA22-like protein a, putative, expressed
LOC_Os02g51300Os.10683.1.A1_s_at5/112+31404472..31408302AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22461.4.S1_at--905--1636Chr07:6264601..6264786 (25 bp)
AGCGCACAGGTTAACTCGAATCGAA
NONE
OsAffx.22461.4.S1_at--27--7737Chr11:26585023..26585047 (25 bp)
GGTTAACTCGAATCGAAAACTTGTG
NONE
OsAffx.22461.4.S1_at--427--5538Chr11:26585037..26585061 (25 bp)
GAAAACTTGTGATTCGACGCAACAA
NONE
OsAffx.22461.4.S1_at--1083--6578Chr11:26585047..26585070 (24 bp)
GATTCGACGCAACAACACTTTGCCT
NONE
OsAffx.22461.4.S1_at--740--2477Chr07:6264807..6264831 (25 bp)
AACACTTTGCCTACTCGAAATGTGA
NONE
OsAffx.22461.4.S1_at--318--4457Chr07:6264815..6264839 (25 bp)
GCCTACTCGAAATGTGAAGCACTTA
NONE
OsAffx.22461.4.S1_at--647--2718Chr11:26585084..26585108 (25 bp)
AAGCACTTAGCATTTCGAGACCCTG
NONE
OsAffx.22461.4.S1_at--372--10458Chr11:26585090..26585114 (25 bp)
TTAGCATTTCGAGACCCTGCAAAGC
NONE
OsAffx.22461.4.S1_at--349--10318Chr11:26585096..26585120 (25 bp)
TTTCGAGACCCTGCAAAGCTTTCTT
NONE
OsAffx.22461.4.S1_at--154--693Chr06:28604320..28604344 (25 bp)
ATGACGAACTCGAAGCCTATTATGA
NONE
OsAffx.22461.4.S1_at--860--4093Chr06:28604324..28604348 (25 bp)
CGAACTCGAAGCCTATTATGATAAT
NONE
Target Sequence 
AGCGCACAGGTTAACTCGAATCGAAAACTTGTGATTCGACGCAACAACACTTTGCCTACTCGAAATGTGAAGCACTTAGC
ATTTCGAGACCCTGCAAAGCTTTCTTCTACCAGGACCGCCATCTCCGATGACGAACTCGAAGCCTATTATGATAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22461.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis