Browse Element(s) Details


OsAffx.22510.1.S1_s_at

Description gb:NM_194106.1
DB_XREF= gi:34915249
GEN=OJ1118_G09.6
TID=OsAffx.22510.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (OJ1118_G09.6), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g358501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35810OsAffx.27187.1.S1_at11/115+21164478..21165906hypothetical protein
LOC_Os05g35820OsAffx.27188.1.S1_at11/115+21167622..21168724hypothetical protein
LOC_Os05g35830OsAffx.27188.2.S1_at11/115+21175629..21176700expressed protein
LOC_Os05g35840OsAffx.27189.1.S1_at11/115+21183159..21184439hypothetical protein
LOC_Os05g35850OsAffx.27190.1.S1_at11/115+21186034..21187616hypothetical protein
LOC_Os05g35850OsAffx.22510.1.S1_s_at1/115+21186034..21187616hypothetical protein
LOC_Os05g35850OsAffx.20967.1.S1_x_at1/115+21186034..21187616hypothetical protein
LOC_Os05g35860NANA5+21189519..21194570retrotransposon protein, putative, unclassified
LOC_Os05g35870NANA5+21196280..21196808hypothetical protein
LOC_Os05g35880Os.47463.1.S1_x_at5/115+21197909..21201607transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g35880Os.14491.2.S1_x_at5/115+21197909..21201607transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g35890NANA5+21204195..21207526transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g35900OsAffx.4537.1.S1_at10/115+21208886..21209377hypothetical protein
LOC_Os05g35910NANA5+21211761..21212559hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22510.1.S1_s_at--681--7611Chr07:674414..674438 (25 bp)
GGGAATAAGGCCAATGCGGATGACA
NONE
OsAffx.22510.1.S1_s_at--624--4391Chr07:674405..674429 (25 bp)
GCCAATGCGGATGACAAGAAGCTCA
NONE
OsAffx.22510.1.S1_s_at--686--7971Chr07:674397..674421 (25 bp)
GGATGACAAGAAGCTCACGGGTTCA
NONE
OsAffx.22510.1.S1_s_at--547--1451Chr07:674393..674413 (21 bp)
AGAAGCTCACGGGTTCAGAGGCTGA
NONE
OsAffx.22510.1.S1_s_at--120--3351Chr07:674057..674406 (25 bp)
CACGGGTTCAGAGGCTGAGGCTACC
NONE
OsAffx.22510.1.S1_s_at--294--4711Chr07:674032..674056 (25 bp)
GCGGCGCTCCACAGTATCGAGAAAG
NONE
OsAffx.22510.1.S1_s_at--430--3431Chr07:674021..674045 (25 bp)
CAGTATCGAGAAAGTTGTGCAGCTT
NONE
OsAffx.22510.1.S1_s_at--604--5571Chr07:674012..674036 (25 bp)
GAAAGTTGTGCAGCTTGGGATGACA
NONE
OsAffx.22510.1.S1_s_at--953--4912Chr07:674000..674024 (25 bp)
GCTTGGGATGACAAGAATCATACTG
NONE
OsAffx.22510.1.S1_s_at--756--3071Chr07:673985..674009 (25 bp)
AATCATACTGGAGACGGATGCCACA
NONE
OsAffx.22510.1.S1_s_at--604--3911Chr07:673978..674002 (25 bp)
CTGGAGACGGATGCCACAGAACTGC
NONE
Target Sequence 
GGGAATAAGGCCAATGCGGATGACAAGAAGCTCACGGGTTCAGAGGCTGAGGCTACCGCGGCGCTCCACAGTATCGAGAA
AGTTGTGCAGCTTGGGATGACAAGAATCATACTGGAGACGGATGCCACAGAACTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22510.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis