Browse Element(s) Details


OsAffx.2259.1.S1_at

Description tigr:9629.m04477
TID=OsAffx.2259.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4673011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46700Os.25567.1.S1_at7/111+26919071..26926245SET domain containing protein, expressed
LOC_Os01g46710Os.5417.3.S1_x_at11/111+26928835..26935324transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g46710Os.5417.2.S1_x_at11/111+26928835..26935324transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g46720Os.27759.1.S2_at11/111+26938647..26945552Protein kinase domain containing protein, expressed
LOC_Os01g46720Os.27759.1.S1_at11/111+26938647..26945552Protein kinase domain containing protein, expressed
LOC_Os01g46720Os.9016.1.S1_x_at2/111+26938647..26945552Protein kinase domain containing protein, expressed
LOC_Os01g46730OsAffx.2259.1.S1_at11/111+26946310..26947082hypothetical protein
LOC_Os01g46740OsAffx.23693.1.S1_at10/111+26949677..26951259hypothetical protein
LOC_Os01g46750Os.19404.1.S1_at11/111+26955766..26963795AMP-binding enzyme family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2259.1.S1_at--576--10531Chr01:26946340..26946364 (25 bp)
TTCTACGTGCCGATCGTTACGATGA
LOC_Os01g46730
OsAffx.2259.1.S1_at--602--6391Chr01:26946351..26946375 (25 bp)
GATCGTTACGATGATATTGGCCTTC
LOC_Os01g46730
OsAffx.2259.1.S1_at--540--6291Chr01:26946360..26946384 (25 bp)
GATGATATTGGCCTTCAACGTGCTA
LOC_Os01g46730
OsAffx.2259.1.S1_at--320--8431Chr01:26946369..26946393 (25 bp)
GGCCTTCAACGTGCTAGTGTTCATA
LOC_Os01g46730
OsAffx.2259.1.S1_at--239--7431Chr01:26946385..26946409 (25 bp)
GTGTTCATAGTACTACCCATCATCG
LOC_Os01g46730
OsAffx.2259.1.S1_at--255--1171Chr01:26946393..26946417 (25 bp)
AGTACTACCCATCATCGATAGGCCA
LOC_Os01g46730
OsAffx.2259.1.S1_at--1132--491Chr01:26946406..26946430 (25 bp)
ATCGATAGGCCACCGGACCCGGTCT
LOC_Os01g46730
OsAffx.2259.1.S1_at--145--7151Chr01:26946427..26946451 (25 bp)
GTCTTCTCCGTTCGTCTTGTGGGCG
LOC_Os01g46730
OsAffx.2259.1.S1_at--536--4631Chr01:26946730..26946754 (25 bp)
GCGATCCGGGATGGCCTGCGCAATC
LOC_Os01g46730
OsAffx.2259.1.S1_at--857--4251Chr01:26946735..26946759 (25 bp)
CCGGGATGGCCTGCGCAATCTGATA
LOC_Os01g46730
OsAffx.2259.1.S1_at--169--4551Chr01:26946771..26946795 (25 bp)
GCGCGTCCTGGGAAAGGTCGATTTT
LOC_Os01g46730
Target Sequence 
TTCTACGTGCCGATCGTTACGATGATATTGGCCTTCAACGTGCTAGTGTTCATAGTACTACCCATCATCGATAGGCCACC
GGACCCGGTCTTCTCCGTTCGTCTTGTGGGCGTCGAGGGGCTCGACCACCCCGACCCGTGCCACCAGCTGCAGTCGGCTG
CCCCGGCGGTGCCGCCGGTTTTCGACCTCGCCGTGGACGTGGGCGGCGTCCCACCGCGCTATCGGGCCTGCGGCGGAGGC
GGCGGGGACGACACCGTGCTGCGGGTCTCCTACCGCGGCATCATCCTTGCTTGGGGCTGCGTGCCGTCGTTCTGCATCGA
CGGCGGCGAGCATGGCAGAGCCAGAGCGGACGGCGTGGTCGTCGTCAGGGCCGAAGCAGGGGCGTGCGCCGCGATCCGGG
ATGGCCTGCGCAATCTGATATGGACCGAGCGGCGCGTCCTGGGAAAGGTCGATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2259.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis