Browse Element(s) Details


OsAffx.22608.4.A1_at

Description tigr:9634.m01121
TID=OsAffx.22608.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1148011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11450Os.55651.1.S1_at11/116+6057842..6059542Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g11460NANA6+6065748..6070866retrotransposon protein, putative, unclassified
LOC_Os06g11470NANA6+6073936..6074916hypothetical protein
LOC_Os06g11480OsAffx.22608.4.A1_at11/116+6080890..6082448hypothetical protein
LOC_Os06g11490Os.7743.1.S1_at11/116+6085799..6087223Plastocyanin-like domain containing protein, expressed
LOC_Os06g11500Os.7743.2.S1_at11/116+6086259..6096661MCM2/3/5 family protein, expressed
LOC_Os06g11500Os.7743.2.S1_x_at11/116+6086259..6096661MCM2/3/5 family protein, expressed
LOC_Os06g11500Os.7743.2.S2_at10/116+6086259..6096661MCM2/3/5 family protein, expressed
LOC_Os06g11510Os.32434.1.S1_at11/116+6100062..6101117expressed protein
LOC_Os06g11520OsAffx.15371.1.S1_at11/116+6101314..6107980LMBR1 integral membrane family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22608.4.A1_at--591--2031Chr06:6082318..6082342 (25 bp)
ACTTACCGAGCGAACACGGAATCGA
LOC_Os06g11480
OsAffx.22608.4.A1_at--654--4731Chr06:6082279..6082303 (25 bp)
GCTGTCTCAAGCGAACACGCAATGA
LOC_Os06g11480
OsAffx.22608.4.A1_at--1014--991Chr06:6081257..6081281 (25 bp)
AGGATCAGGCATACATTCTCACACC
LOC_Os06g11480
OsAffx.22608.4.A1_at--481--491Chr06:6081217..6081241 (25 bp)
ATCGGTACGGTTACCTTGCAAGCTA
LOC_Os06g11480
OsAffx.22608.4.A1_at--286--10751Chr06:6081202..6081226 (25 bp)
TTGCAAGCTACGCTGACTCCAACTA
LOC_Os06g11480
OsAffx.22608.4.A1_at--22--2051Chr06:6081150..6081174 (25 bp)
ACTTTCCCTCACTTGTGACAATGGG
LOC_Os06g11480
OsAffx.22608.4.A1_at--1138--6451Chr06:6081123..6081147 (25 bp)
GATAAAGGTCCAGCGGCAGTTGATG
LOC_Os06g11480
OsAffx.22608.4.A1_at--372--1132Chr11:16129900..16129942 (24 bp)
AGTGCAGAACTGCTACCTCATCTCT
NONE
OsAffx.22608.4.A1_at--28--9611Chr06:6080957..6080981 (25 bp)
TCATCTCTAGCGGTGCACTCAGGGA
LOC_Os06g11480
OsAffx.22608.4.A1_at--1059--7331Chr06:6080945..6080969 (25 bp)
GTGCACTCAGGGATTCATCTGCTAC
LOC_Os06g11480
OsAffx.22608.4.A1_at--254--9091Chr06:6080926..6080950 (25 bp)
TGCTACACCTTCACTCAGTGTGGAT
LOC_Os06g11480
Target Sequence 
ACTTACCGAGCGAACACGGAATCGAGGAGAATGTGGTTCGCTGTCTCAAGCGAACACGCAATGAGGATTTGGTGGATAGT
AGCGATGGGACAAGGATCAGGCATACATTCTCACACCACTGGAGATGGATTAATCGGTACGGTTACCTTGCAAGCTACGC
TGACTCCAACTACAGCTCATCCCCTTCTTCCCTCTCACAACTTTCCCTCACTTGTGACAATGGGGAGATAAAGGTCCAGC
GGCAGTTGATGATGGAAGATATTCCTGTAGTGCAGAACTGCTACCTCATCTCTAGCGGTGCACTCAGGGATTCATCTGCT
ACACCTTCACTCAGTGTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22608.4.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis