Browse Element(s) Details


OsAffx.22619.1.S1_x_at

Description gb:NM_185307.1
DB_XREF= gi:34897699
GEN=OSJNBb0091I19.9
TID=OsAffx.22619.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0091I19.9 (OSJNBb0091I19.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g167501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g16720NANA6+9644565..9646796transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g16730OsAffx.15463.1.S1_at9/116+9649355..9652143hypothetical protein
LOC_Os06g16740OsAffx.27676.1.S1_at11/116+9654226..9659017hypothetical protein
LOC_Os06g16740Os.53321.1.S1_at1/116+9654226..9659017hypothetical protein
LOC_Os06g16750OsAffx.22619.1.S1_x_at1/116+9671109..9672622hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22619.1.S1_x_at--19--7531Chr07:10994901..10994925 (25 bp)
GGGCGGTGGCTCTCGGGCGTTGGTG
NONE
OsAffx.22619.1.S1_x_at--381--7511Chr07:10994879..10994903 (25 bp)
GTGGCGGTGCTAAGGCTCGGGCGGG
NONE
OsAffx.22619.1.S1_x_at--118--7631Chr07:10994802..10994826 (25 bp)
GGGACGCGGGATCCGCAACCGCCGG
NONE
OsAffx.22619.1.S1_x_at--381--1872Chr07:10994762..10994786 (25 bp)
ACGACCACGGCGACCATGACGACAG
NONE
OsAffx.22619.1.S1_x_at--142--4611Chr07:10994753..10994777 (25 bp)
GCGACCATGACGACAGGCCAGGCCG
NONE
OsAffx.22619.1.S1_x_at--952--5831Chr07:10994751..10994775 (25 bp)
GACCATGACGACAGGCCAGGCCGCG
NONE
OsAffx.22619.1.S1_x_at--520--4291Chr07:10994638..10994662 (25 bp)
CCTCTAGCAACGATGACCATGGCGA
NONE
OsAffx.22619.1.S1_x_at--844--10011Chr07:10994634..10994658 (25 bp)
TAGCAACGATGACCATGGCGACCAC
NONE
OsAffx.22619.1.S1_x_at--323--871Chr07:10994620..10994644 (25 bp)
ATGGCGACCACCACGACAACAATGA
NONE
OsAffx.22619.1.S1_x_at--1114--5611Chr07:10994606..10994630 (25 bp)
GACAACAATGACAACGACGGGCTGG
NONE
OsAffx.22619.1.S1_x_at--871--3271Chr07:10994604..10994628 (25 bp)
CAACAATGACAACGACGGGCTGGGC
NONE
Target Sequence 
GGGCGGTGGCTCTCGGGCGTTGGTGGCGGTGCTAAGGCTCGGGCGGGGAGGCGCCGCCGCTGGGCCGCAGGAGGCCGGAT
CCGCCGCCGCTGGGCCGTGGGGACGCGGGATCCGCAACCGCCGGGCCACGACGACGACGACGACCACGGCGACCATGACG
ACAGGCCAGGCCGCGGGCGGCGGATGTGCGGCGGCAGGAGGGGGCGGAGGGCCTCCTCCTCCTCCCCTCTCCCACCTCTC
TCCCCTCCTCCTTCCCTGCGCCCCCTCTAGCAACGATGACCATGGCGACCACCACGACAACAATGACAACGACGGGCTGG
GC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22619.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis