Browse Element(s) Details


OsAffx.15463.1.S1_at

Description tigr:9634.m01684
TID=OsAffx.15463.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g167309/11hypothetical protein
LOC_Os02g052101/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g16700Os.40855.2.S1_x_at11/116+9623150..9627769hypothetical protein
LOC_Os06g16700Os.40855.4.S1_x_at2/116+9623150..9627769hypothetical protein
LOC_Os06g16700Os.40855.4.S1_at1/116+9623150..9627769hypothetical protein
LOC_Os06g16710NANA6+9636930..9639533transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g16720NANA6+9644565..9646796transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g16730OsAffx.15463.1.S1_at9/116+9649355..9652143hypothetical protein
LOC_Os06g16740OsAffx.27676.1.S1_at11/116+9654226..9659017hypothetical protein
LOC_Os06g16740Os.53321.1.S1_at1/116+9654226..9659017hypothetical protein
LOC_Os06g16750OsAffx.22619.1.S1_x_at1/116+9671109..9672622hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15463.1.S1_at--993--5991Chr06:9650557..9650581 (25 bp)
GAGACGCACGCAAGCACGAGGAAGT
LOC_Os06g16730
OsAffx.15463.1.S1_at--99--1076Chr11:13176929..13176955 (25 bp)
AGGGTTTTCTCTAATGGGCTATTGG
NONE
OsAffx.15463.1.S1_at--654--10231Chr06:9650450..9650474 (25 bp)
TATTGGGCTGTCTTGGGCTTTTACA
LOC_Os06g16730
OsAffx.15463.1.S1_at--628--7571NONE
GGGCTTTTACATTAATTCGTGGCAG
NONE
OsAffx.15463.1.S1_at--751--9871NONE
TACATTAATTCGTGGCAGCTTGCCG
NONE
OsAffx.15463.1.S1_at--89--3411Chr06:9649678..9649702 (25 bp)
CAGCTTGCCGGAGGAGAGCAGACTC
LOC_Os06g16730
OsAffx.15463.1.S1_at--643--3371Chr06:9649660..9649684 (25 bp)
CAGACTCCGGCCCTTGGGAACGCTT
LOC_Os06g16730
OsAffx.15463.1.S1_at--1102--8171Chr06:9649644..9649668 (25 bp)
GGAACGCTTCCCTCAACTGCTGCAT
LOC_Os06g16730
OsAffx.15463.1.S1_at--6--1871Chr06:9649593..9649617 (25 bp)
ACGACGAACACTGGGCACTCGTGGA
LOC_Os06g16730
OsAffx.15463.1.S1_at--567--2451Chr06:9649538..9649562 (25 bp)
AAAATTCAGCAACCGCATGGACATC
LOC_Os06g16730
OsAffx.15463.1.S1_at--1138--4771Chr06:9649476..9649500 (25 bp)
GCTGCGCACCGACGAGAACGACGTC
LOC_Os06g16730
Target Sequence 
GAGACGCACGCAAGCACGAGGAAGTGCGGTGCTGGTGGGGAGGACCGGTGGAGTGGGAAGGAGAGGTGGGGACGGGGTAT
GGAAAGTTAGGGTTTTCTCTAATGGGCTATTGGGCTGTCTTGGGCTTTTACATTAATTCGTGGCAGCTTGCCGGAGGAGA
GCAGACTCCGGCCCTTGGGAACGCTTCCCTCAACTGCTGCATCGACCTCTCCCTTGACTCCCTCCCCGACGACGAACACT
GGGCACTCGTGGACAGCCACGATGGCCTCCTCCTCCTCTGCACAAAATTCAGCAACCGCATGGACATCCCGGACAACTCC
GCCGTCTGCGACCCTGTCTCCGGCCGCTGCGCACCGACGAGAACGACGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15463.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis