Browse Element(s) Details


OsAffx.22693.1.S1_x_at

Description tigr:9631.m03857
TID=OsAffx.22693.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4009011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g40060Os.28873.2.A1_at11/113+22208198..22209514hypothetical protein
LOC_Os03g40070Os.52824.1.S1_at11/113+22209847..22213778transposon protein, putative, unclassified, expressed
LOC_Os03g40080OsAffx.25445.1.S1_at5/113+22217138..22221790GRAS family transcription factor containing protein, expressed
LOC_Os03g40084NANA3+22223436..22224648hypothetical protein
LOC_Os03g40090OsAffx.22693.1.S1_x_at11/113+22225901..22227021hypothetical protein
LOC_Os03g40100Os.8785.1.S1_at11/113+22236313..22239261ACT domain containing protein, putative, expressed
LOC_Os03g40110Os.20699.2.S1_x_at11/113+22240343..22247189Nop14-like family protein, expressed
LOC_Os03g40110Os.20699.1.S1_at11/113+22240343..22247189Nop14-like family protein, expressed
LOC_Os03g40110Os.23213.1.S1_at1/113+22240343..22247189Nop14-like family protein, expressed
LOC_Os03g40120NANA3+22249998..22250516hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22693.1.S1_x_at--1083--6171Chr03:22226723..22226747 (25 bp)
GAGGAGACGTCGATGCTGCCAGCTC
LOC_Os03g40090
OsAffx.22693.1.S1_x_at--715--5631Chr03:22226690..22226714 (25 bp)
GACACCGCCGGCTTGAAGTCGACGA
LOC_Os03g40090
OsAffx.22693.1.S1_x_at--354--4171Chr03:22226686..22226709 (24 bp)
CGCCGGCTTGAAGTCGACGAGCAGA
LOC_Os03g40090
OsAffx.22693.1.S1_x_at--321--4531Chr03:22226485..22226509 (25 bp)
GCCGCCGAGGTCCAGATCTGAGCCA
LOC_Os03g40090
OsAffx.22693.1.S1_x_at--433--6151Chr03:22226479..22226503 (25 bp)
GAGGTCCAGATCTGAGCCATCGCCT
LOC_Os03g40090
OsAffx.22693.1.S1_x_at--89--1291Chr03:22226472..22226496 (25 bp)
AGATCTGAGCCATCGCCTCGAGGAC
LOC_Os03g40090
OsAffx.22693.1.S1_x_at--354--4511Chr03:22226440..22226464 (25 bp)
GCCGAAGCCATGACCGCTCCGAGGA
LOC_Os03g40090
OsAffx.22693.1.S1_x_at--378--8011Chr03:22226295..22226319 (25 bp)
GGAGGGACAGAGAGCGACGACGGGA
LOC_Os03g40090
OsAffx.22693.1.S1_x_at--633--871Chr03:22226271..22226295 (25 bp)
ATGGCGCGGCCGGAGTCAACGTCGG
LOC_Os03g40090
OsAffx.22693.1.S1_x_at--472--4011Chr03:22226240..22226264 (25 bp)
CGTCCTGCTTGCTGGCCGCGGCAGA
LOC_Os03g40090
OsAffx.22693.1.S1_x_at--176--1511Chr03:22226173..22226197 (25 bp)
AGCCGGCGTCGGTGGATTTGGTGGG
LOC_Os03g40090
Target Sequence 
GAGGAGACGTCGATGCTGCCAGCTCCCTCCGTCGACACCGCCGGCTTGAAGTCGACGAGCAGAGAGAGGGAGGAGGGAGG
AGCTCCGCGGCTCGCCGCCGTCCTGCTTTCCCGCACGCCGCGGGAGAAAGAGAGGGAGGAGGGAGGGGGTCTGCCGCTCG
CCTCGGGGACCTCCGCCGCCGAGGTCCAGATCTGAGCCATCGCCTCGAGGACCTCCACCGCCGAAGCCATGACCGCTCCG
AGGACGACGACCACGAGCACGAGGACGCCGTCGCCGCTCCACTCCGGATCCGCGCCGCCGCCACTGTCCTCCCGCGCCAG
CGCTCCGGATCCGCGCGCGCAGACGAGGAGCTGGGCCGTGGCGGGGAGGGACAGAGAGCGACGACGGGATGGCGCGGCCG
GAGTCAACGTCGGTGGCGCCGTCCTGCTTGCTGGCCGCGGCAGACGAGGAGCTGGATCCGTGTCGCCGCCGGGGACAGAG
GGAGAGAGCCGGCGTCGGTGGATTTGGTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22693.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis