Browse Element(s) Details


OsAffx.22711.4.A1_x_at

Description gb:NM_185104.1
DB_XREF= gi:34897293
TID=OsAffx.22711.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0027B08.28), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g377405/11transposon protein, putative, unclassified
LOC_Os05g311203/11retrotransposon protein, putative, unclassified
LOC_Os07g426903/11retrotransposon protein, putative, unclassified
LOC_Os09g152803/11retrotransposon protein, putative, unclassified
LOC_Os01g324202/11retrotransposon protein, putative, unclassified
LOC_Os08g246802/11retrotransposon protein, putative, unclassified
LOC_Os07g220002/11retrotransposon, putative, centromere-specific
LOC_Os04g262101/11transposon protein, putative, unclassified
LOC_Os02g142101/11retrotransposon protein, putative, unclassified
LOC_Os08g294801/11retrotransposon protein, putative, unclassified
LOC_Os04g251701/11transposon protein, putative, unclassified
LOC_Os05g297801/11retrotransposon protein, putative, unclassified
LOC_Os04g547101/11retrotransposon protein, putative, unclassified
LOC_Os03g368901/11retrotransposon protein, putative, unclassified
LOC_Os12g395801/11retrotransposon protein, putative, unclassified
LOC_Os12g288501/11retrotransposon protein, putative, unclassified
LOC_Os01g478901/11retrotransposon protein, putative, unclassified
LOC_Os01g542501/11retrotransposon protein, putative, unclassified
LOC_Os05g225801/11retrotransposon protein, putative, unclassified
LOC_Os11g263001/11transposon protein, putative, unclassified
LOC_Os09g398301/11retrotransposon protein, putative, unclassified
LOC_Os02g225501/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37710OsAffx.14998.1.S1_at10/115+21992483..21993153hypothetical protein
LOC_Os05g37720OsAffx.4549.1.S1_at10/115+21993561..21996895hypothetical protein
LOC_Os05g37730Os.18392.1.S1_at11/115+21998191..22000281MYB-like transcription factor DIVARICATA, putative, expressed
LOC_Os05g37740OsAffx.22711.4.A1_x_at5/115+22014949..22015620transposon protein, putative, unclassified
LOC_Os05g37750OsAffx.21171.4.S1_x_at6/115+22016699..22018354retrotransposon protein, putative, unclassified
LOC_Os05g37750OsAffx.21171.2.S1_at2/115+22016699..22018354retrotransposon protein, putative, unclassified
LOC_Os05g37750OsAffx.21171.3.S1_x_at2/115+22016699..22018354retrotransposon protein, putative, unclassified
LOC_Os05g37760OsAffx.21171.5.S1_at3/115+22021606..22025575retrotransposon protein, putative, unclassified
LOC_Os05g37760OsAffx.20729.1.S1_x_at2/115+22021606..22025575retrotransposon protein, putative, unclassified
LOC_Os05g37760OsAffx.21171.5.S1_x_at1/115+22021606..22025575retrotransposon protein, putative, unclassified
LOC_Os05g37770OsAffx.4550.1.S1_at11/115+22029092..22029677hypothetical protein
LOC_Os05g37780Os.53173.1.S1_at11/115+22039657..22040582expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22711.4.A1_x_at--244--1892Chr03:34775753..34775777 (25 bp)
ACGATATCCGGAGCGATCCATGCAC
NONE
OsAffx.22711.4.A1_x_at--169--594Chr05:22015117..22015141 (25 bp)
ATGACGGGCTTGATTCCGCCGTTCT
LOC_Os05g37740
OsAffx.22711.4.A1_x_at--582--63112Chr12:24387696..24387715 (20 bp)
GATGACGCTGGCCATCTTCGTGCAT
LOC_Os12g39580
OsAffx.22711.4.A1_x_at--49--4619Chr08:17936597..17936621 (25 bp)
GCGACCGACGATGCGGTTGTTCCAG
LOC_Os08g29480
OsAffx.22711.4.A1_x_at--278--891Chr03:34775956..34775980 (25 bp)
AGGCCTTCTTCATTCCGTAGCTTCT
NONE
OsAffx.22711.4.A1_x_at--633--91Chr03:34775967..34775991 (25 bp)
ATTCCGTAGCTTCTGCAAGGCGCGG
NONE
OsAffx.22711.4.A1_x_at--959--2156Chr08:14779571..14779594 (24 bp)
ACAGCGGGTCAGTACATCGAGAGCA
LOC_Os08g24680
OsAffx.22711.4.A1_x_at--365--353Chr05:23179871..23179890 (20 bp)
ATAAGGACTGGTTCTACACCGCGTT
NONE
OsAffx.22711.4.A1_x_at--796--9253Chr08:14779684..14779708 (25 bp)
TCCTGAAAGGTCTGCCGCATGGCTG
LOC_Os08g24680
OsAffx.22711.4.A1_x_at--392--9936Chr05:22015513..22015537 (25 bp)
TACGACGCGGTGTGGGATCGCCTTA
LOC_Os05g37740
OsAffx.22711.4.A1_x_at--704--1754Chr05:18014105..18014129 (25 bp)
ACCTCTTCAGGAACGATCCCGTGGA
LOC_Os05g31120
Target Sequence 
ACGATATCCGGAGCGATCCATGCACCTCTTGTCCTTCGCCATGACGGGCTTGATTCCGCCGTTCTCCAGATTCTTCCATG
AGGTTCTGGATTTCTACGAAATTCATGCCTTGCATCTCGCACCCAATGCCGTGATGACGCTGGCCATCTTCGTGCATTTG
TGTGAGATGTTCATTGGGGTGCGACCGACGATGCGGTTGTTCCAGGCCTTCTTCATTCCGTAGCTTCTGCAAGGCGCGGT
GGTGGGGGGATGCTACTTCCAGCCCCGGCCAGGCACAGCGGGTCAGTACATCGAGAGCAATCTCCGCAAGAAATGGGAGG
ACTGGAATAAGGACTGGTTCTACACCGCGTTGCCGGACCATCCGCGACTTCGAGTTCCCGCTGGCCCTCCTGAAAGGTCT
GCCGCATGGCTGGCGACTTCGGAGCTGGGCGAGGAATACGACGCGGTGTGGGATCGCCTTAGGGGCCTGCGGAGCCTGGG
CCTCACGGGGGCGATGGTCTTTGGCGATTACTTCCGCCGCTGCATCGCACCTCTTCAGGAACGATCCCGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22711.4.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis