Browse Element(s) Details


OsAffx.4550.1.S1_at

Description tigr:9633.m03491
TID=OsAffx.4550.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3777011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37740OsAffx.22711.4.A1_x_at5/115+22014949..22015620transposon protein, putative, unclassified
LOC_Os05g37750OsAffx.21171.4.S1_x_at6/115+22016699..22018354retrotransposon protein, putative, unclassified
LOC_Os05g37750OsAffx.21171.2.S1_at2/115+22016699..22018354retrotransposon protein, putative, unclassified
LOC_Os05g37750OsAffx.21171.3.S1_x_at2/115+22016699..22018354retrotransposon protein, putative, unclassified
LOC_Os05g37760OsAffx.21171.5.S1_at3/115+22021606..22025575retrotransposon protein, putative, unclassified
LOC_Os05g37760OsAffx.20729.1.S1_x_at2/115+22021606..22025575retrotransposon protein, putative, unclassified
LOC_Os05g37760OsAffx.21171.5.S1_x_at1/115+22021606..22025575retrotransposon protein, putative, unclassified
LOC_Os05g37770OsAffx.4550.1.S1_at11/115+22029092..22029677hypothetical protein
LOC_Os05g37780Os.53173.1.S1_at11/115+22039657..22040582expressed protein
LOC_Os05g37790OsAffx.14999.1.S1_at11/115+22047186..22047623hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4550.1.S1_at--98--3271Chr05:22029610..22029634 (25 bp)
CAACGGCGGCATCGATTGGGTACTC
LOC_Os05g37770
OsAffx.4550.1.S1_at--992--9091Chr05:22029577..22029601 (25 bp)
TGCTGCCGCTGGCTAGACCACTTTT
LOC_Os05g37770
OsAffx.4550.1.S1_at--244--8491Chr05:22029568..22029592 (25 bp)
TGGCTAGACCACTTTTCCAACTAGA
LOC_Os05g37770
OsAffx.4550.1.S1_at--602--6151Chr05:22029524..22029548 (25 bp)
GAGGTTGCCACCAATGAGCTGAGGC
LOC_Os05g37770
OsAffx.4550.1.S1_at--973--8911Chr05:22029510..22029534 (25 bp)
TGAGCTGAGGCATCGTCTGGATCAC
LOC_Os05g37770
OsAffx.4550.1.S1_at--159--511Chr05:22029499..22029523 (25 bp)
ATCGTCTGGATCACCTCTCTGGCCA
LOC_Os05g37770
OsAffx.4550.1.S1_at--664--3291Chr05:22029476..22029500 (25 bp)
CAAATCCGCCACGTGGGCTTGAGAA
LOC_Os05g37770
OsAffx.4550.1.S1_at--987--1451Chr05:22029455..22029479 (25 bp)
AGAAGATTGTTGTCACCGCGTGGGC
LOC_Os05g37770
OsAffx.4550.1.S1_at--883--10791Chr05:22029446..22029470 (25 bp)
TTGTCACCGCGTGGGCTCAAGGAAG
LOC_Os05g37770
OsAffx.4550.1.S1_at--472--3331Chr05:22029207..22029231 (25 bp)
CACTGCGTGGGCTCGGTGTAGCCAA
LOC_Os05g37770
OsAffx.4550.1.S1_at--968--7431Chr05:22029192..22029216 (25 bp)
GTGTAGCCAAAGGACGAGACCGGAA
LOC_Os05g37770
Target Sequence 
CAACGGCGGCATCGATTGGGTACTCGGGGAGGCTGCTGCCGCTGGCTAGACCACTTTTCCAACTAGATCCCCCAAGTGGG
CTTGGGGAGGTTGCCACCAATGAGCTGAGGCATCGTCTGGATCACCTCTCTGGCCAAATCCGCCACGTGGGCTTGAGAAG
ATTGTTGTCACCGCGTGGGCTCAAGGAAGCTGCCACCGCCGTGTGGGCTCAGGGAGCTCCTCGACTGCCGCCACTGCGTG
GGCTCGGTGTAGCCAAAGGACGAGACCGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4550.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis