Browse Element(s) Details


OsAffx.14999.1.S1_at

Description tigr:9633.m03493
TID=OsAffx.14999.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3779011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37760OsAffx.21171.5.S1_at3/115+22021606..22025575retrotransposon protein, putative, unclassified
LOC_Os05g37760OsAffx.20729.1.S1_x_at2/115+22021606..22025575retrotransposon protein, putative, unclassified
LOC_Os05g37760OsAffx.21171.5.S1_x_at1/115+22021606..22025575retrotransposon protein, putative, unclassified
LOC_Os05g37770OsAffx.4550.1.S1_at11/115+22029092..22029677hypothetical protein
LOC_Os05g37780Os.53173.1.S1_at11/115+22039657..22040582expressed protein
LOC_Os05g37790OsAffx.14999.1.S1_at11/115+22047186..22047623hypothetical protein
LOC_Os05g37800Os.51914.1.A1_at11/115+22056861..22059120expressed protein
LOC_Os05g37810OsAffx.15200.2.S1_x_at11/115+22066811..22067634hypothetical protein
LOC_Os05g37810OsAffx.15200.2.S1_at11/115+22066811..22067634hypothetical protein
LOC_Os05g37810OsAffx.15200.3.S1_s_at4/115+22066811..22067634hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14999.1.S1_at--715--51Chr05:22047480..22047501 (22 bp)
ATAAGGGAAAATGACCATCCTAGCC
LOC_Os05g37790
OsAffx.14999.1.S1_at--906--5831Chr05:22047489..22047513 (25 bp)
GACCATCCTAGCCTGCAAAGGAAAC
LOC_Os05g37790
OsAffx.14999.1.S1_at--918--3391Chr05:22047492..22047516 (25 bp)
CATCCTAGCCTGCAAAGGAAACAAG
LOC_Os05g37790
OsAffx.14999.1.S1_at--598--2871Chr05:22047545..22047569 (25 bp)
AAGGGAAAGTTCATATCGGCTGTCA
LOC_Os05g37790
OsAffx.14999.1.S1_at--333--1071Chr05:22047546..22047570 (25 bp)
AGGGAAAGTTCATATCGGCTGTCAA
LOC_Os05g37790
OsAffx.14999.1.S1_at--686--7611Chr05:22047547..22047571 (25 bp)
GGGAAAGTTCATATCGGCTGTCAAG
LOC_Os05g37790
OsAffx.14999.1.S1_at--961--8151Chr05:22047548..22047572 (25 bp)
GGAAAGTTCATATCGGCTGTCAAGA
LOC_Os05g37790
OsAffx.14999.1.S1_at--656--5571Chr05:22047549..22047573 (25 bp)
GAAAGTTCATATCGGCTGTCAAGAA
LOC_Os05g37790
OsAffx.14999.1.S1_at--980--1211Chr05:22047552..22047576 (25 bp)
AGTTCATATCGGCTGTCAAGAAGAA
LOC_Os05g37790
OsAffx.14999.1.S1_at--735--9591Chr05:22047555..22047579 (25 bp)
TCATATCGGCTGTCAAGAAGAAAAG
LOC_Os05g37790
OsAffx.14999.1.S1_at--427--491Chr05:22047559..22047583 (25 bp)
ATCGGCTGTCAAGAAGAAAAGCGCT
LOC_Os05g37790
Target Sequence 
ATAAGGGAAAATGACCATCCTAGCCTGCAAAGGAAACAAGGAGATGGGGATAAAAAGGGAAAGCTGGAAAGGGAAAGTTC
ATATCGGCTGTCAAGAAGAAAAGCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14999.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis