Browse Element(s) Details


OsAffx.22722.1.S1_at

Description gb:NM_184701.1
DB_XREF= gi:34896491
GEN=OSJNBa0057E11.15
TID=OsAffx.22722.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative GAG-POL precursor (OSJNBa0057E11.15), mRNA.
PROD=putative GAG-POL precursor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3570011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g434646/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g194504/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g076804/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g357003/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g227703/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g231203/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g313102/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g261202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g276402/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g151302/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g380762/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g122702/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g283302/11retrotransposon protein, putative, unclassified
LOC_Os05g285502/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g182102/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g287801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g231001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g300301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g254301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g149001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g332801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g191141/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g256501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g181901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g247601/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g35670NANA3+19711240..19713776retrotransposon protein, putative, unclassified
LOC_Os03g35690OsAffx.1646.1.S1_x_at1/113+19721635..19724601retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os03g35700OsAffx.22722.1.S1_x_at11/113+19728264..19729481retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35700OsAffx.22722.1.S1_at11/113+19728264..19729481retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35710OsAffx.10496.1.S1_at11/113+19731268..19735740retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35710OsAffx.20628.2.S1_at2/113+19731268..19735740retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35710OsAffx.20628.2.S1_x_at2/113+19731268..19735740retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35710OsAffx.30582.1.S1_s_at2/113+19731268..19735740retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35720OsAffx.1647.1.S1_at11/113+19738530..19741290retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35720OsAffx.29148.1.S1_at2/113+19738530..19741290retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35730NANA3+19749058..19751728hypothetical protein
LOC_Os03g35740OsAffx.22699.1.S1_x_at3/113+19753467..19758173retrotransposon protein, putative, unclassified
LOC_Os03g35740Os.45161.1.A1_x_at1/113+19753467..19758173retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22722.1.S1_at--963--4577Chr10:6594528..6594897 (25 bp)
GCGCTCAGCCGGAAACTATCTCACT
LOC_Os10g12270
OsAffx.22722.1.S1_at--936--9658Chr10:6594532..6594901 (25 bp)
TCAGCCGGAAACTATCTCACTACTT
LOC_Os10g12270
OsAffx.22722.1.S1_at--893--39111Chr12:14201075..14201098 (24 bp)
CGGAAACTATCTCACTACTTCCAAG
LOC_Os12g24760
OsAffx.22722.1.S1_at--74--2071Chr03:19728985..19729009 (25 bp)
ACTTCCAAGGTCACTTGGTCATGGT
LOC_Os03g35700
OsAffx.22722.1.S1_at--808--4371Chr03:19728989..19729013 (25 bp)
CCAAGGTCACTTGGTCATGGTGGTC
LOC_Os03g35700
OsAffx.22722.1.S1_at--939--171Chr03:19729309..19729333 (25 bp)
ATTTTTATGCGTCTCACAAGGTGGC
LOC_Os03g35700
OsAffx.22722.1.S1_at--470--10331Chr03:19729312..19729336 (25 bp)
TTTATGCGTCTCACAAGGTGGCAGA
LOC_Os03g35700
OsAffx.22722.1.S1_at--601--611Chr03:19729315..19729339 (25 bp)
ATGCGTCTCACAAGGTGGCAGAATA
LOC_Os03g35700
OsAffx.22722.1.S1_at--90--95522Chr12:20235586..20235608 (23 bp)
TCTTCACGGACTAAGGATTGCGATT
NONE
OsAffx.22722.1.S1_at--971--9678Chr12:16748768..16749139 (25 bp)
TCACGGACTAAGGATTGCGATTTCT
LOC_Os12g28330
OsAffx.22722.1.S1_at--1110--1912Chr04:25501310..25501334 (25 bp)
ACGGACTAAGGATTGCGATTTCTTT
LOC_Os04g43464
Target Sequence 
GCGCTCAGCCGGAAACTATCTCACTACTTCCAAGGTCACTTGGTCATGGTGGTCACATCGTTTCCACTCGGAGACATACT
TCATAATCATGAAGCAAATGGGCGGATCGCAAAGTGGGCCTTAGAATTGATGTCCTTGGATATATCCTTCAAGCTACGAA
CTTCGATCAAGTCCCAAGCTTTAGCCAACTTTGTCGCCGAGTGGACCGAGTGCAAAGAAGACATGCCCGAGGAGAAGATG
GAGTATTGGACCATGTATTTTGACGGGTCGAAGAGGCTTTCAGGCACTGGAGCAGGGGTTGTTCTAATTTCCCCGACTGG
AGAAAGACTGAGCTACGTATTGTGGATACATTTTTATGCGTCTCACAAGGTGGCAGAATACGAGGTGCTTCTTCACGGAC
TAAGGATTGCGATTTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22722.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis