Browse Element(s) Details


OsAffx.22722.1.S1_x_at

Description gb:NM_184701.1
DB_XREF= gi:34896491
GEN=OSJNBa0057E11.15
TID=OsAffx.22722.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative GAG-POL precursor (OSJNBa0057E11.15), mRNA.
PROD=putative GAG-POL precursor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3570011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g182102/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g194502/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g434642/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g313102/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g231202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g227702/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g357002/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g380762/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g276402/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g408701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g232901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g082241/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g301801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g251401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g012001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g224201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g382701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g460401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g151801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g167501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g135101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g207201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g191141/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g332301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g332801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g122701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g222501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g213901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g181901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g261201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g235301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g230701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g151301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g110401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g285501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g283301/11retrotransposon protein, putative, unclassified
LOC_Os02g352901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g287801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g076801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g269201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g316501/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g35670NANA3+19711240..19713776retrotransposon protein, putative, unclassified
LOC_Os03g35690OsAffx.1646.1.S1_x_at1/113+19721635..19724601retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os03g35700OsAffx.22722.1.S1_x_at11/113+19728264..19729481retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35700OsAffx.22722.1.S1_at11/113+19728264..19729481retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35710OsAffx.10496.1.S1_at11/113+19731268..19735740retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35710OsAffx.20628.2.S1_at2/113+19731268..19735740retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35710OsAffx.20628.2.S1_x_at2/113+19731268..19735740retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35710OsAffx.30582.1.S1_s_at2/113+19731268..19735740retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35720OsAffx.1647.1.S1_at11/113+19738530..19741290retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35720OsAffx.29148.1.S1_at2/113+19738530..19741290retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35730NANA3+19749058..19751728hypothetical protein
LOC_Os03g35740OsAffx.22699.1.S1_x_at3/113+19753467..19758173retrotransposon protein, putative, unclassified
LOC_Os03g35740Os.45161.1.A1_x_at1/113+19753467..19758173retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22722.1.S1_x_at--722--4391Chr03:19728569..19728593 (25 bp)
GCCAAGCTCTCAGAAAGATGTTCAA
LOC_Os03g35700
OsAffx.22722.1.S1_x_at--937--9658Chr10:6594532..6594901 (25 bp)
TCAGCCGGAAACTATCTCACTACTT
LOC_Os10g12270
OsAffx.22722.1.S1_x_at--809--4371Chr03:19728989..19729013 (25 bp)
CCAAGGTCACTTGGTCATGGTGGTC
LOC_Os03g35700
OsAffx.22722.1.S1_x_at--1052--1992Chr06:16547976..16547998 (23 bp)
ACTCGGAGACATACTTCATAATCAT
NONE
OsAffx.22722.1.S1_x_at--55--46932Chr12:13317884..13317907 (24 bp)
GCGGATCGCAAAGTGGGCCTTAGAA
LOC_Os12g23530
OsAffx.22722.1.S1_x_at--694--7931Chr03:19729097..19729121 (25 bp)
GGATATATCCTTCAAGCTACGAACT
LOC_Os03g35700
OsAffx.22722.1.S1_x_at--697--2855Chr10:11182831..11183278 (25 bp)
AAGTCCCAAGCTTTAGCCAACTTTG
LOC_Os10g22250
OsAffx.22722.1.S1_x_at--938--171Chr03:19729309..19729333 (25 bp)
ATTTTTATGCGTCTCACAAGGTGGC
LOC_Os03g35700
OsAffx.22722.1.S1_x_at--57--10151Chr03:19729314..19729338 (25 bp)
TATGCGTCTCACAAGGTGGCAGAAT
LOC_Os03g35700
OsAffx.22722.1.S1_x_at--972--9678Chr12:16748768..16749139 (25 bp)
TCACGGACTAAGGATTGCGATTTCT
LOC_Os12g28330
OsAffx.22722.1.S1_x_at--576--10573Chr03:19729373..19729397 (25 bp)
TTCTTTGGGAATCCGGCGTCTGATA
LOC_Os03g35700
Target Sequence 
GCCAAGCTCTCAGAAAGATGTTCAAAAGCTGACTGGTTGCATGGCGGCGCTCAGCCGGAAACTATCTCACTACTTCCAAG
GTCACTTGGTCATGGTGGTCACATCGTTTCCACTCGGAGACATACTTCATAATCATGAAGCAAATGGGCGGATCGCAAAG
TGGGCCTTAGAATTGATGTCCTTGGATATATCCTTCAAGCTACGAACTTCGATCAAGTCCCAAGCTTTAGCCAACTTTGT
CGCCGAGTGGACCGAGTGCAAAGAAGACATGCCCGAGGAGAAGATGGAGTATTGGACCATGTATTTTGACGGGTCGAAGA
GGCTTTCAGGCACTGGAGCAGGGGTTGTTCTAATTTCCCCGACTGGAGAAAGACTGAGCTACGTATTGTGGATACATTTT
TATGCGTCTCACAAGGTGGCAGAATACGAGGTGCTTCTTCACGGACTAAGGATTGCGATTTCTTTGGGAATCCGGCGTCT
GATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22722.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis