Browse Element(s) Details


OsAffx.22908.1.S1_at

Description gb:NM_183685.1
DB_XREF= gi:34894497
GEN=OJ1116_C07.12
TID=OsAffx.22908.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1116_C07.12 (OJ1116_C07.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g190701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g19030OsAffx.29269.1.S1_at11/118+11355391..11356794hypothetical protein
LOC_Os08g19040OsAffx.17067.1.S1_at11/118+11357517..11358381hypothetical protein
LOC_Os08g19050NANA8+11362595..11364229hypothetical protein
LOC_Os08g19060OsAffx.5871.1.S1_at11/118+11372447..11375356retrotransposon, putative, centromere-specific
LOC_Os08g19070OsAffx.22908.1.S1_at1/118+11377703..11377975hypothetical protein
LOC_Os08g19080NANA8+11381049..11383349Transposable element protein, putative, Retrotrans_gag
LOC_Os08g19089NANA8+11385089..11385390NA
LOC_Os08g19100OsAffx.5872.1.S1_at11/118+11388992..11390465hypothetical protein
LOC_Os08g19110NANA8+11397296..11398623hypothetical protein
LOC_Os08g19114Os.17546.2.S1_x_at11/118+11401363..11403462expressed protein
LOC_Os08g19114Os.17546.5.A1_x_at6/118+11401363..11403462expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22908.1.S1_at--230--2451Chr01:11625699..11625723 (25 bp)
AACAATCCTCCACCGGTCACTAAAG
NONE
OsAffx.22908.1.S1_at--984--3791Chr01:11625739..11625763 (25 bp)
CTCGCGCGCAACAATTGAATTTAGT
NONE
OsAffx.22908.1.S1_at--153--7731Chr01:11625915..11625939 (25 bp)
GGTGGAGGCCCAAACAAGGTCGACT
NONE
OsAffx.22908.1.S1_at--1066--3134Chr11:12494216..12494235 (20 bp)
AATTCGGAGTCCAGTACCAGGTTTG
NONE
OsAffx.22908.1.S1_at--972--5971Chr01:11626286..11626310 (25 bp)
GAGAACAATTTTGCCGCTAGATCGG
NONE
OsAffx.22908.1.S1_at--1027--6011Chr01:11627285..11627309 (25 bp)
GAGATGGGTCAACCTCACCTTGGAC
NONE
OsAffx.22908.1.S1_at--956--10811Chr01:11627304..11627328 (25 bp)
TTGGACCTTCAGAGCCCTATTTATA
NONE
OsAffx.22908.1.S1_at--898--10491Chr01:11627311..11627335 (25 bp)
TTCAGAGCCCTATTTATACGCGGAG
NONE
OsAffx.22908.1.S1_at--1015--6131NONE
GAGGTTGGCGGCTTGCGATTTCTAC
NONE
OsAffx.22908.1.S1_at--277--3951NONE
CGGCTTGCGATTTCTACTTCGAGAA
NONE
OsAffx.22908.1.S1_at--848--7611Chr01:11628042..11628066 (25 bp)
GGGACACGCCACGAGGGCACAAGAT
NONE
Target Sequence 
AACAATCCTCCACCGGTCACTAAAGGACCGATAACAAGAGCTCGCGCGCAACAATTGAATTTAGTGGTGAGCTCGTTCCT
ATATTCTTCTTTGTACGAATTTGAGAATAGATTGCTACCTAATGATTATATTGTGATTAGGAACAATGGAGGGGACAATG
AGACACTTGGAGAAGGACTTAGAGTCATAAACGATCATCGAGGACGTCCAAGTCAAGGTGGAGGCCCAAACAAGGTCGAC
TTCGAGTGCAATTCGGAGTCCAGTACCAGGTTTGGATTTTGCTTAGATTATTCTGTCGAGAACAATTTTGCCGCTAGATC
GGTTTCTGCAAGAGAAGAAGAGGAAGTGCCCGAGATGGGTCAACCTCACCTTGGACCTTCAGAGCCCTATTTATACGCGG
AGGAGGTTGGCGGCTTGCGATTTCTACTTCGAGAAGGGGACATCTATGGGTATAAATACAAGCCCCCTAGGAAGAGAGGG
GACACGCCACGAGGGCACAAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22908.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis