Browse Element(s) Details


OsAffx.23118.1.S1_at

Description gb:NM_184336.1
DB_XREF= gi:34895751
GEN=P0024G09.22
TID=OsAffx.23118.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0024G09.22 (P0024G09.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0512010/11Ubiquitin fusion degradation protein UFD1 containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05060Os.11429.1.S1_at11/111+2371287..2373563Mitochondrial glycoprotein, expressed
LOC_Os01g05070Os.17266.1.S1_at11/111+2375613..2379386expressed protein
LOC_Os01g05080Os.1798.1.S1_at11/111+2380332..2382440Thylakoid lumenal 15 kDa protein, chloroplast precursor, putative, expressed
LOC_Os01g05090Os.1799.1.S1_a_at11/111+2383175..2385399expressed protein
LOC_Os01g05100OsAffx.25610.1.S1_s_at11/111+2385407..2387285expressed protein
LOC_Os01g05100Os.53463.1.S1_at9/111+2385407..2387285expressed protein
LOC_Os01g05120OsAffx.23118.1.S1_at10/111+2397747..2399686Ubiquitin fusion degradation protein UFD1 containing protein
LOC_Os01g05130Os.17736.1.S1_at11/111+2400072..2402749scarecrow-like transcription factor 11, putative, expressed
LOC_Os01g05140Os.36597.1.S1_at10/111+2403277..2404853expressed protein
LOC_Os01g05140Os.36597.1.S1_x_at10/111+2403277..2404853expressed protein
LOC_Os01g05140OsAffx.10913.1.S1_at10/111+2403277..2404853expressed protein
LOC_Os01g05150Os.29062.1.S1_at11/111+2411073..2411874expressed protein
LOC_Os01g05160OsAffx.23120.1.S1_at10/111+2416461..2416964hypothetical protein
LOC_Os01g05170OsAffx.22785.1.S1_at11/111+2419044..2419704expressed protein
LOC_Os01g05170OsAffx.22785.1.S1_s_at11/111+2419044..2419704expressed protein
LOC_Os01g05170OsAffx.22785.1.S1_x_at11/111+2419044..2419704expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23118.1.S1_at--201--591Chr01:2398853..2399003 (25 bp)
ATCCACATCCCGACCATGATGATGG
LOC_Os01g05120
OsAffx.23118.1.S1_at--1016--9131Chr01:2398816..2398840 (25 bp)
TGCGAGAGAACGATCTCGTGCTGCT
LOC_Os01g05120
OsAffx.23118.1.S1_at--926--5671Chr01:2398736..2398760 (25 bp)
GACTTCCACAAGCTTTCTGAACCAA
LOC_Os01g05120
OsAffx.23118.1.S1_at--910--9471NONE
TCTGAACCAAGATACCTGCTGGAGT
NONE
OsAffx.23118.1.S1_at--609--9131Chr01:2398174..2398197 (24 bp)
TGCTGGAGTACAACTTCCGCAACTA
LOC_Os01g05120
OsAffx.23118.1.S1_at--349--10651Chr01:2398160..2398184 (25 bp)
TTCCGCAACTACTTCTGCCTTACGA
LOC_Os01g05120
OsAffx.23118.1.S1_at--1135--9471Chr01:2398147..2398171 (25 bp)
TCTGCCTTACGACCGGCGAGACGAT
LOC_Os01g05120
OsAffx.23118.1.S1_at--440--4511Chr01:2398067..2398091 (25 bp)
GCCGACGCTGTCTGCGTCATCGAGA
LOC_Os01g05120
OsAffx.23118.1.S1_at--886--9371Chr01:2398048..2398072 (25 bp)
TCGAGACCGACTGCGAGGTCGAGTT
LOC_Os01g05120
OsAffx.23118.1.S1_at--473--1031Chr01:2398033..2398057 (25 bp)
AGGTCGAGTTCGACCAGGCCCTCGA
LOC_Os01g05120
OsAffx.23118.1.S1_at--314--10611Chr01:2397835..2397859 (25 bp)
TTCGGTTTGGCTCGTCGGCTCCTGC
LOC_Os01g05120
Target Sequence 
ATCCACATCCCGACCATGATGATGGAGCACTTGGGCCTGCGAGAGAACGATCTCGTGCTGCTGCGAAGCACGTCGATCCC
CAAGGCCACCTTCATCAAGCTGCAGCCTCACACCTCTGACTTCCACAAGCTTTCTGAACCAAGATACCTGCTGGAGTACA
ACTTCCGCAACTACTTCTGCCTTACGACCGGCGAGACGATCGCCGTGGCGGCGGGGGACAGGTTCTACTACCTCGACGTC
GTGGAGACGAGGCCGGCCGACGCTGTCTGCGTCATCGAGACCGACTGCGAGGTCGAGTTCGACCAGGCCCTCGACCAAGC
GGAGCCCGCCGCCGCCGCCGCCATGCAGGTCGACGGCGTCGGCGCCGGCGAGCCGGAGCCGGCCCGGTTCACCGGCTTCA
GGATGCGGATGGACGGCAAGCCGGTGGAGGAGGAGAAGAAGACGATGCCGCCGCCGGCGACGGCGGCGGCGCCGCCCAAA
AGGGGGCTTCGGTTTGGCTCGTCGGCTCCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23118.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis