Browse Element(s) Details


Os.11429.1.S1_at

Description gb:AK066079.1
DB_XREF= gi:32976097
TID=Os.11429.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11429 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0019D06.29 (P0019D06.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013052K21, full insert sequence.
FL= gb:AK104561.1 gb:AK104721.1 gb:AK066079.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0506011/11Mitochondrial glycoprotein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04990Os.31513.1.S1_at11/111+2346870..2350304Mitochondrial carrier protein, expressed
LOC_Os01g05000OsAffx.1934.1.S1_at11/111+2352985..2353847hypothetical protein
LOC_Os01g05010Os.1625.1.S1_at11/111+2354653..2357239Mitochondrial glycoprotein, expressed
LOC_Os01g05020OsAffx.23117.1.S1_at11/111+2358601..2360616hypothetical protein
LOC_Os01g05030Os.43764.1.A1_at9/111+2361522..2364720hAT family dimerisation domain containing protein
LOC_Os01g05030OsAffx.24046.2.S1_x_at3/111+2361522..2364720hAT family dimerisation domain containing protein
LOC_Os01g05030OsAffx.24046.7.S1_x_at3/111+2361522..2364720hAT family dimerisation domain containing protein
LOC_Os01g05030OsAffx.25967.2.S1_at1/111+2361522..2364720hAT family dimerisation domain containing protein
LOC_Os01g05030OsAffx.24046.3.S1_x_at1/111+2361522..2364720hAT family dimerisation domain containing protein
LOC_Os01g05040OsAffx.10912.1.S1_x_at11/111+2366331..2368118hypothetical protein
LOC_Os01g05050OsAffx.10571.1.S1_at11/111+2369125..2370868Mitochondrial glycoprotein
LOC_Os01g05060Os.11429.1.S1_at11/111+2371287..2373563Mitochondrial glycoprotein, expressed
LOC_Os01g05070Os.17266.1.S1_at11/111+2375613..2379386expressed protein
LOC_Os01g05080Os.1798.1.S1_at11/111+2380332..2382440Thylakoid lumenal 15 kDa protein, chloroplast precursor, putative, expressed
LOC_Os01g05090Os.1799.1.S1_a_at11/111+2383175..2385399expressed protein
LOC_Os01g05100OsAffx.25610.1.S1_s_at11/111+2385407..2387285expressed protein
LOC_Os01g05100Os.53463.1.S1_at9/111+2385407..2387285expressed protein
LOC_Os01g05120OsAffx.23118.1.S1_at10/111+2397747..2399686Ubiquitin fusion degradation protein UFD1 containing protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11429.1.S1_at--306--2871Chr01:2371942..2371966 (25 bp)
AAGGTGACAGTCTCCAAGGGCTCTG
LOC_Os01g05060
Os.11429.1.S1_at--1144--8311Chr01:2371924..2371948 (25 bp)
GGCTCTGGGCCCAAACTTGAGTTCA
LOC_Os01g05060
Os.11429.1.S1_at--299--1771Chr01:2371900..2371924 (25 bp)
ACCTGCACAGCCTTTCGTGAGGAGA
LOC_Os01g05060
Os.11429.1.S1_at--887--5631Chr01:2371825..2371849 (25 bp)
GAGAAATTCCCTTACGAGGGCCCTG
LOC_Os01g05060
Os.11429.1.S1_at--454--6131Chr01:2371718..2371834 (25 bp)
GAGGGCCCTGAATTCACCGAGCTAC
LOC_Os01g05060
Os.11429.1.S1_at--466--5311Chr01:2371680..2371704 (25 bp)
GAAGGGCCTATTCAAGTACCTGGAG
LOC_Os01g05060
Os.11429.1.S1_at--227--5851Chr01:2371635..2371659 (25 bp)
GACCACCAACTACATGCACGATTAC
LOC_Os01g05060
Os.11429.1.S1_at--1035--4891Chr01:2371507..2371531 (25 bp)
GCTTAGCCTTTTAGCATACCTGCAT
LOC_Os01g05060
Os.11429.1.S1_at--1146--3191Chr01:2371419..2371443 (25 bp)
CAATGTGCGATTTCTGATGCCCAGT
LOC_Os01g05060
Os.11429.1.S1_at--608--3051Chr01:2371390..2371414 (25 bp)
AATCTGAGGCTATTGGCACTTATGA
LOC_Os01g05060
Os.11429.1.S1_at--485--10471Chr01:2371340..2371364 (25 bp)
TTACCGTTTCTTGGTGCTGCTTATC
LOC_Os01g05060
Target Sequence 
AAGGTGACAGTCTCCAAGGGCTCTGGGCCCAAACTTGAGTTCACCTGCACAGCCTTTCGTGAGGAGATCACCATCGACGA
CATGTTAATAGTGGAGAATGCAGCCACAGAAGGAGATGAGAAATTCCCTTACGAGGGCCCTGAATTCACCGAGCTACCGG
TGAATGTGCAGAAGGGCCTATTCAAGTACCTGGAGCAAAGAGGGATCACTCTGCCGACCACCAACTACATGCACGATTAC
ATGGTGACCAAGCAAACCAAGGAGTACGTCGGGTGGATGACCAAGCTGAAGGACTTCGTCCGGCAATGAGAAATTGCCGA
GCAATTTGGCAGGATTTTTGGTAGCTTAGCCTTTTAGCATACCTGCATATGTAACAAGGATTACTAGAATTATGCGAAGC
AATGCAACAACCGGGGAAACTGCCTTCCCTGCAATGTGCGATTTCTGATGCCCAGTAGTCAATCTGAGGCTATTGGCACT
TATGATATCAGTGCTTATTTTACTAGCCTTTTACCGTTTCTTGGTGCTGCTTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11429.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis