Browse Element(s) Details


OsAffx.25967.2.S1_at

Description tigr:9632.m00952
TID=OsAffx.25967.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1078011/11hypothetical protein
LOC_Os01g050301/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g10740OsAffx.25965.1.S1_at11/114+5815165..5819326retrotransposon protein, putative, unclassified, expressed
LOC_Os04g10750Os.13467.1.S1_x_at11/114+5826295..5829281phosphate:H+ symporter family protein, expressed
LOC_Os04g10750Os.4253.1.S1_s_at1/114+5826295..5829281phosphate:H+ symporter family protein, expressed
LOC_Os04g10750Os.46784.1.S1_x_at1/114+5826295..5829281phosphate:H+ symporter family protein, expressed
LOC_Os04g10750Os.57546.1.S1_x_at1/114+5826295..5829281phosphate:H+ symporter family protein, expressed
LOC_Os04g10760OsAffx.25966.1.S1_at11/114+5830399..5831370hypothetical protein
LOC_Os04g10770OsAffx.13759.1.S1_at10/114+5834176..5835197hypothetical protein
LOC_Os04g10780OsAffx.25967.2.S1_at11/114+5838720..5839881hypothetical protein
LOC_Os04g10790OsAffx.25968.1.S1_at9/114+5841021..5842079hypothetical protein
LOC_Os04g10800OsAffx.13760.1.S1_at11/114+5845185..5848187major facilitator superfamily protein
LOC_Os04g10820OsAffx.13200.2.S1_x_at4/114+5852433..5852828retrotransposon protein, putative, unclassified
LOC_Os04g10830OsAffx.25969.1.S1_at10/114+5855080..5857645hypothetical protein
LOC_Os04g10840OsAffx.21897.5.S1_x_at4/114+5860417..5863341retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g10850NANA4+5863657..5869766retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25967.2.S1_at--231--7631Chr04:5839244..5839268 (25 bp)
GGGACATCGCGTTGAGATCCGCTGC
LOC_Os04g10780
OsAffx.25967.2.S1_at--175--5671Chr04:5839246..5839270 (25 bp)
GACATCGCGTTGAGATCCGCTGCCG
LOC_Os04g10780
OsAffx.25967.2.S1_at--734--9151Chr04:5839327..5839351 (25 bp)
TGCCCACCTCCGAACTGAGGAGAGG
LOC_Os04g10780
OsAffx.25967.2.S1_at--804--10091Chr04:5839403..5839737 (25 bp)
TATGTGGGACCCACAGAAGCATCAG
LOC_Os04g10780
OsAffx.25967.2.S1_at--1007--1491Chr04:5839736..5839760 (25 bp)
AGCACGGAATGCTTACATGTTCACT
LOC_Os04g10780
OsAffx.25967.2.S1_at--1119--3931Chr04:5839740..5839764 (25 bp)
CGGAATGCTTACATGTTCACTGAAA
LOC_Os04g10780
OsAffx.25967.2.S1_at--987--731Chr04:5839752..5839776 (25 bp)
ATGTTCACTGAAATCACTAGCTGGT
LOC_Os04g10780
OsAffx.25967.2.S1_at--389--5591Chr04:5839761..5839785 (25 bp)
GAAATCACTAGCTGGTGATGGCGGC
LOC_Os04g10780
OsAffx.25967.2.S1_at--1151--5993Chr04:5839799..5839823 (25 bp)
GAGAGCTGGCCTTTGTAGTAGATGT
LOC_Os04g10780
OsAffx.25967.2.S1_at--625--8431Chr04:5839806..5839830 (25 bp)
GGCCTTTGTAGTAGATGTATCCGAG
LOC_Os04g10780
OsAffx.25967.2.S1_at--27--10051Chr04:5839817..5839841 (25 bp)
TAGATGTATCCGAGGAGGTCAGCGA
LOC_Os04g10780
Target Sequence 
GGGACATCGCGTTGAGATCCGCTGCCGCCTCATCACCCGTCGTCAGCCACCGAACTCCCGCCTCCCCCACCGGCTGGCTG
CCCTGCCCACCTCCGAACTGAGGAGAGGGAGAGAAAAGAAGAGGAGAGAGGAAGAGAGGGGAGGGGAAGAAGGGGCTGAT
ATGTGGGACCCACAGAAGCATCAGCACGGAATGCTTACATGTTCACTGAAATCACTAGCTGGTGATGGCGGCGTCGATAT
TGGGGGAGAGCTGGCCTTTGTAGTAGATGTATCCGAGGAGGTCAGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25967.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis