Browse Element(s) Details


OsAffx.13759.1.S1_at

Description tigr:9632.m00951
TID=OsAffx.13759.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1077010/11hypothetical protein
LOC_Os06g096791/1120 kDa chaperonin, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g10724Os.52702.1.S1_at3/114+5808650..5809720hypothetical protein
LOC_Os04g10730Os.40360.1.S1_x_at1/114+5810725..5813044hypothetical protein
LOC_Os04g10740OsAffx.25965.1.S1_at11/114+5815165..5819326retrotransposon protein, putative, unclassified, expressed
LOC_Os04g10750Os.13467.1.S1_x_at11/114+5826295..5829281phosphate:H+ symporter family protein, expressed
LOC_Os04g10750Os.4253.1.S1_s_at1/114+5826295..5829281phosphate:H+ symporter family protein, expressed
LOC_Os04g10750Os.46784.1.S1_x_at1/114+5826295..5829281phosphate:H+ symporter family protein, expressed
LOC_Os04g10750Os.57546.1.S1_x_at1/114+5826295..5829281phosphate:H+ symporter family protein, expressed
LOC_Os04g10760OsAffx.25966.1.S1_at11/114+5830399..5831370hypothetical protein
LOC_Os04g10770OsAffx.13759.1.S1_at10/114+5834176..5835197hypothetical protein
LOC_Os04g10780OsAffx.25967.2.S1_at11/114+5838720..5839881hypothetical protein
LOC_Os04g10790OsAffx.25968.1.S1_at9/114+5841021..5842079hypothetical protein
LOC_Os04g10800OsAffx.13760.1.S1_at11/114+5845185..5848187major facilitator superfamily protein
LOC_Os04g10820OsAffx.13200.2.S1_x_at4/114+5852433..5852828retrotransposon protein, putative, unclassified
LOC_Os04g10830OsAffx.25969.1.S1_at10/114+5855080..5857645hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009408biological_processresponse to heat
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0005516molecular_functioncalmodulin binding
GO:0051087molecular_functionchaperone binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13759.1.S1_at--339--9171Chr04:5835143..5835167 (25 bp)
TGCCCGACGCTGTTTGAAGTCGCCT
LOC_Os04g10770
OsAffx.13759.1.S1_at--1028--2271Chr04:5835110..5835134 (25 bp)
AAATCCGACCACAACCTTGGAGATA
LOC_Os04g10770
OsAffx.13759.1.S1_at--295--811Chr04:5835070..5835094 (25 bp)
ATGGGTTTCGATCATTATCTCCTCC
LOC_Os04g10770
OsAffx.13759.1.S1_at--440--9233Chr06:4960902..4960926 (25 bp)
TCCTCTTTCTGTTTTCCCAAGAATC
NONE
OsAffx.13759.1.S1_at--423--5951Chr04:5835022..5835046 (25 bp)
GAGCAAAATCGCATCGTATTGAGTT
LOC_Os04g10770
OsAffx.13759.1.S1_at--1067--31Chr04:5835005..5835029 (25 bp)
ATTGAGTTTGGTCTCGAGTCCTGTC
LOC_Os04g10770
OsAffx.13759.1.S1_at--143--6111NONE
GAGTCCTGTCCTAAAGTGGAGCCTG
NONE
OsAffx.13759.1.S1_at--703--3851Chr04:5834459..5834483 (25 bp)
CTGAAGAGCCTGTACCTTTGGATAT
LOC_Os04g10770
OsAffx.13759.1.S1_at--400--2491Chr04:5834343..5834367 (25 bp)
AACAGTTCCACTTTGGGTTCTGGTG
LOC_Os04g10770
OsAffx.13759.1.S1_at--449--3651Chr04:5834294..5834318 (25 bp)
CTTCTGTACCTGCTTCTCAATTAAA
LOC_Os04g10770
OsAffx.13759.1.S1_at--862--3031Chr04:5834258..5834282 (25 bp)
AATCTGAGGGCTTGACTACGTCTGA
LOC_Os04g10770
Target Sequence 
TGCCCGACGCTGTTTGAAGTCGCCTCCTCCGTGAAATCCGACCACAACCTTGGAGATAATCCTAAATTGATTGATGGGTT
TCGATCATTATCTCCTCCTCTTTCTGTTTTCCCAAGAATCGGAGCAAAATCGCATCGTATTGAGTTTGGTCTCGAGTCCT
GTCCTAAAGTGGAGCCTGAAAATGGTACTGAAGAGCCTGTACCTTTGGATATGGAGAATTTCGATGATGGATGTTCGGAG
AGGAAACATGAGGAGAATAAGAATCAGGATATAGGGAAGGAGTCTGGCTTTGGGGACTCTGGAAACAGTTCCACTTTGGG
TTCTGGTGGCCTGGGCATTGTGAGGGGTGGGCCTTCTGTACCTGCTTCTCAATTAAATCTGATACCTGAATCTGAGGGCT
TGACTACGTCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13759.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis